The 2006 Kyrgyzstan Women's League was the second season of the Kyrgyzstan Women's League, the top division of Women's football in Kyrgyzstan. El Dorado Altyn-Olko Bishkek was the champion.
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| 1 | El Dorado Altyn-Olko Bishkek | 5 | 5 | 0 | 0 | 23 | 2 | +21 | 15 |
| 2 | Azaliya Birinchi Bishkek | 5 | 4 | 0 | 1 | 20 | 4 | +16 | 12 |
| 3 | Zhyldyz Karakol | 5 | 3 | 0 | 2 | 13 | 11 | +2 | 9 |
| 4 | Sholokov Sokuluk | 5 | 2 | 0 | 3 | 9 | 12 | −3 | 6 |
| 5 | Abdyzh-Ata Kant | 5 | 1 | 0 | 4 | 6 | 22 | −16 | 3 |
| 6 | Molodezhnaya Sbornaya KR | 5 | 0 | 0 | 5 | 4 | 24 | −20 | 0 |