The 2006 Men's European Water Polo Championship Qualifier was split into three tournaments to determine the last six competing teams for the 2006 Men's European Water Polo Championship, held from September 1 to September 10, 2006 in Belgrade, Serbia.
Group A (France, Slovenia, Slovakia and Malta) played a round robin in Kranj, Slovenia, while Group B (Greece, Netherlands, Poland and Moldova) competed in Eindhoven, Netherlands. Group C was contested in Imperia, Italy with Belarus, Italy, Romania and Turkey. All three events were held from April 7 to April 9, 2006.
| Team | Points | G | W | D | L | GF | GA | Diff | |
|---|---|---|---|---|---|---|---|---|---|
| 1. |  Slovenia | 6 | 3 | 3 | 0 | 0 | 29 | 19 | +10 |
| 2. |  Slovakia | 4 | 3 | 2 | 0 | 1 | 32 | 24 | +8 |
| 3. |  France | 2 | 3 | 1 | 0 | 2 | 33 | 27 | +6 |
| 4. |  Malta | 0 | 3 | 0 | 0 | 3 | 17 | 41 | –24 |
| Slovenia | 9 – 7 | France |
| Slovakia | 15 – 4 | Malta |
| Slovakia | 11 – 10 | France |
| Slovenia | 10 – 6 | Malta |
| France | 16 – 7 | Malta |
| Slovenia | 10 – 6 | Slovakia |
| Team | Points | G | W | D | L | GF | GA | Diff | |
|---|---|---|---|---|---|---|---|---|---|
| 1. |  Greece | 6 | 3 | 3 | 0 | 0 | 53 | 18 | +35 |
| 2. |  Netherlands | 4 | 3 | 2 | 0 | 1 | 38 | 20 | +18 |
| 3. |  Poland | 2 | 3 | 1 | 0 | 2 | 25 | 43 | –18 |
| 4. |  Moldova | 0 | 3 | 0 | 0 | 3 | 20 | 55 | –35 |
| Greece | 25 – 7 | Moldova |
| Netherlands | 14 – 8 | Poland |
| Netherlands | 17 – 3 | Moldova |
| Greece | 19 – 4 | Poland |
| Poland | 13 – 10 | Moldova |
| Netherlands | 7 – 9 | Greece |
| Team | Points | G | W | D | L | GF | GA | Diff | |
|---|---|---|---|---|---|---|---|---|---|
| 1. |  Italy | 6 | 3 | 3 | 0 | 0 | 54 | 8 | +46 |
| 2. |  Romania | 4 | 3 | 2 | 0 | 1 | 35 | 21 | +14 |
| 3. |  Turkey | 2 | 3 | 1 | 0 | 2 | 16 | 33 | –17 |
| 4. |  Belarus | 0 | 3 | 0 | 0 | 3 | 6 | 49 | –43 |
| Italy | 12 – 5 | Romania |
| Turkey | 8 – 2 | Belarus |
| Romania | 18 – 4 | Belarus |
| Italy | 19 – 3 | Turkey |
| Romania | 12 – 5 | Turkey |
| Italy | 23 – 0 | Belarus |