| Caenorhabditis remanei | |
|---|---|
Scientific classification  | |
| Domain: | Eukaryota |
| Kingdom: | Animalia |
| Phylum: | Nematoda |
| Class: | Chromadorea |
| Order: | Rhabditida |
| Family: | Rhabditidae |
| Genus: | Caenorhabditis |
| Species: | C. remanei |
| Binomial name | |
| Caenorhabditis remanei (Sudhaus, 1974) | |
Caenorhabditis remanei is a species of nematode found in North America and Europe, and likely lives throughout the temperate world. Several strains have been developed in the laboratory. [1]
This 1-mm nematode lives in soil, compost, and similar materials, where it consumes bacteria. It may be found in association with soil-living invertebrates such as snails, slugs, and pill bugs. [1] It lives with the snail Fruticicola sieboldiana in Japan. It has been associated with the isopods Trachelipus rathkii , Armadillidium nasatum , Cylisticus convexus , and Porcellio scaber in Ohio. [2]
The genome of this nematode has been sequenced, and it was found to contain about 26,000 genes. [3]
This species groups with C. latens in the 'Elegans' supergroup in phylogenetic studies.
Unlike many other Caenorhabditis species, which are hermaphrodites, [1] C. remanei has both males and females. The male of this species employs a mating plug. [4] This species can hybridize with Caenorhabditis brenneri , but only when C. remanei males mate with C. brenneri females, and then the offspring are apparently sterile. [5]
When C. remanei individuals that were derived from recently isolated natural populations were inbred they showed dramatic reductions in brood size and relative fitness compared to outcrossed individuals. [6] Over time the decline in fitness accumulated and nearly 90% of inbred lines went extinct.
Caenorhabditis elegans is a free-living transparent nematode about 1 mm in length that lives in temperate soil environments. It is the type species of its genus. The name is a blend of the Greek caeno- (recent), rhabditis (rod-like) and Latin elegans (elegant). In 1900, Maupas initially named it Rhabditides elegans. Osche placed it in the subgenus Caenorhabditis in 1952, and in 1955, Dougherty raised Caenorhabditis to the status of genus.
Dauer describes an alternative developmental stage of nematode worms, particularly rhabditids including Caenorhabditis elegans, whereby the larva goes into a type of stasis and can survive harsh conditions. Since the entrance of the dauer stage is dependent on environmental cues, it represents a classic and well studied example of polyphenism. The dauer state is given other names in the various types of nematodes such as ‘diapause’ or ‘hypobiosis’, but since the C. elegans nematode has become the most studied nematode, the term ‘dauer stage’ or 'dauer larvae' is becoming universally recognised when referring to this state in other free-living nematodes. The dauer stage is also considered to be equivalent to the infective stage of parasitic nematode larvae.
Inbreeding depression is the reduced biological fitness that has the potential to result from inbreeding. The loss of genetic diversity that is seen due to inbreeding, results from small population size. Biological fitness refers to an organism's ability to survive and perpetuate its genetic material. Inbreeding depression is often the result of a population bottleneck. In general, the higher the genetic variation or gene pool within a breeding population, the less likely it is to suffer from inbreeding depression, though inbreeding and outbreeding depression can simultaneously occur.
Caenorhabditis briggsae is a small nematode, closely related to Caenorhabditis elegans. The differences between the two species are subtle. The male tail in C. briggsae has a slightly different morphology from C. elegans. Other differences include changes in vulval precursor competence and the placement of the excretory duct opening. C. briggsae is frequently used to study the differences between it and the more intimately understood C. elegans, especially at the DNA and protein sequence level. Several mutant strains of C. briggsae have also been isolated that facilitate genetic analysis of this organism. C. briggsae, like C. elegans, is a hermaphrodite. The genome sequence for C. briggsae was determined in 2003.
Caenorhabditis is a genus of nematodes which live in bacteria-rich environments like compost piles, decaying dead animals and rotting fruit. The name comes from Greek: caeno- ; rhabditis = rod-like.
Caenorhabditis brenneri is a small nematode, closely related to the model organism Caenorhabditis elegans. Its genome is being sequenced by Washington University in St. Louis Genome Sequencing Center. This species has previously been referred to as C. sp 4 and Caenorhabditis sp. CB5161, but was recently formally described and given its scientific name. This name is in honor of Sydney Brenner, recognizing his pioneering role in starting active research in the field of C. elegans biology and development.
The nematodes, roundworms or eelworms constitute the phylum Nematoda. They are a diverse animal phylum inhabiting a broad range of environments. Most species are free-living, feeding on microorganisms, but there are many that are parasitic. The parasitic worms (helminths) are the cause of soil-transmitted helminthiases.
A behaviour mutation is a genetic mutation that alters genes that control the way in which an organism behaves, causing their behavioural patterns to change.
David B. Dusenbery is a biophysicist with a central interest in how information influences the behavior of organisms. In later years, he also considered the physical constraints hydrodynamics imposes on microorganisms and gametes.
WormBase is an online biological database about the biology and genome of the nematode model organism Caenorhabditis elegans and contains information about other related nematodes. WormBase is used by the C. elegans research community both as an information resource and as a place to publish and distribute their results. The database is regularly updated with new versions being released every two months. WormBase is one of the organizations participating in the Generic Model Organism Database (GMOD) project.
Caenorhabditis elegans- microbe interactions are defined as any interaction that encompasses the association with microbes that temporarily or permanently live in or on the nematode C. elegans. The microbes can engage in a commensal, mutualistic or pathogenic interaction with the host. These include bacterial, viral, unicellular eukaryotic, and fungal interactions. In nature C. elegans harbours a diverse set of microbes. In contrast, C. elegans strains that are cultivated in laboratories for research purposes have lost the natural associated microbial communities and are commonly maintained on a single bacterial strain, Escherichia coli OP50. However, E. coli OP50 does not allow for reverse genetic screens because RNAi libraries have only been generated in strain HT115. This limits the ability to study bacterial effects on host phenotypes. The host microbe interactions of C. elegans are closely studied because of their orthologs in humans. Therefore, the better we understand the host interactions of C. elegans the better we can understand the host interactions within the human body.
Caenorhabditis angaria is a small nematode, in the same genus as the model organism Caenorhabditis elegans. The name is from the Latin after the tendency to ride weevils. Prior to 2011, the species was referred to as C. sp. 2, C. sp. 3, and C. sp. PS1010. Its genome was sequenced at the California Institute of Technology in 2010. This species is gonochoristic. It has distinct morphology and behavior compared to C. elegans; notably, C. angaria males exhibit a spiral mating behavior. Its divergence from C. elegans is similar to the distance between humans and fish. C. castelli is its closest relative, and the two species can produce F1 hybrids.
Caenorhabditis tropicalis is a species of Caenorhabditis nematodes, belonging to the Elegans super-group and Elegans group within the genus. It is a close relative of C. wallacei.C. tropicalis is collected frequently in tropical South America, Caribbean islands, and various islands in the Indian and Pacific Oceans from rotting fruit, flowers and stems. C. tropicalis was referred to as “C. sp. 11” prior to 2014.
Caenorhabditis afra is a species of nematodes in the genus Caenorhabditis. This gonochoristic (male-female) species was isolated by Matthias Herrmann in Begoro, Ghana, Africa in 2007. Its genome is being sequenced at McDonnell Genome Institute at Washington University School of Medicine.
Caenorhabditis nigoni is a male-female species in the Elegans group of the genus Caenorhabditis, first identified and described as "Caenorhabditis species 9" or "C. sp. 9" before being renamed as "C. nigoni". The specific epithet is a tribute to Victor Nigon who first studied Caenorhabditis elegans in the laboratory with Ellsworth Dougherty in the 1940s. Isolates come from the Democratic Republic of the Congo and Kerala, India.
Caenorhabditis doughertyi is a species of nematodes in the genus Caenorhabditis. Prior to 2014, it was referred to as C. sp. 10
Caenorhabditis latens is a species of nematode. Prior to 2014, it was referred to as Caenorhabditis sp. 23. The reference strain VX88 was isolated from soil near a lotus pond, and strain VX85 was isolated from soil under rotten grass in Juifeng Village, Wuhan City, Hubei Province, China.
Caenorhabditis sinica, is a species of Caenorhabditis nematodes, belonging to the Elegans super-group and Elegans group within the genus. It is closely related to several species isolated from the lands adjacent to the Indian and Pacific Oceans, as well as to C. briggsae and C. nigoni. The species was known as “C. sp. 5” prior to 2014. C. sinica is known for having very high genetic diversity in its genome. Like other Caenorhabditis species, C. sinica is a ~1mm long roundworm with a transparent cuticle and that eats bacteria. Wild isolate strains of C. sinica have been collected from various rotting plant tissue substrates in temperate and tropical regions throughout China since its initial isolation in 2005.
Paul W. Sternberg is an American biologist. He does research for WormBase on C. elegans, a model organism.
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