PLOS One

Last updated

History

Development

The Gordon and Betty Moore Foundation awarded PLOS a $9 million grant in December 2002 and $1 million grant in May 2006 for its financial sustainability and launch of new free-access biomedical journals. [1] [2] Later, PLOS One was launched in December 2006 as a beta version named PLOS One. It launched with commenting and note-making functionality, and added the ability to rate articles in July 2007. In September 2007, the ability to leave "trackbacks" on articles was added. [3] In August 2008, the journal moved from a weekly to a daily publication schedule, publishing articles as soon as they became ready. [4] PLOS One came out of "beta" in October 2008.

In September 2009, as part of its article-level metrics program, PLOS One made its full online usage data, including HTML page views and PDF or XML download statistics, publicly available for every published article. In mid-2012, as part of a rebranding of PLoS as PLOS, the journal changed its name to PLOS One. [5]

Output and turnaround

YearPapers Published
20071,200 [6]
20082,800 [6]
20094,406 [7]
20106,749 [7]
201113,798 [8]
201223,468 [9]
201331,500 [10]
201430,040 [11]
201528,107 [12]
201622,054 [13]
201721,185 [14]
201818,859 [14]
201916,318 [14]

The number of papers published by PLOS One grew rapidly from inception to 2013 and has since declined somewhat. M By 2010, it was estimated to have become the largest journal in the world, [7] and in 2011, 1 in 60 articles indexed by PubMed were published by PLOS One. [15] By September 2017, PLOS One confirmed they had published over 200,000 articles. [16] By November 2017, the journal Scientific Reports overtook PLOS One in terms of output. [17] [18]

At PLOS One, the median review time has grown from 37 days to 125 days over the first ten years of operation, according to Himmelstein's analysis, done for Nature . The median between acceptance and posting a paper on the site has decreased from 35 to 15 days over the same period. Both numbers for 2016 roughly correspond to the industry-wide averages for biology-related journals. [19] [20] The average acceptance rates for manuscripts submitted in 2020 and 2021 ranges from 47.9 to 49.9%.

Management

The founding managing editor was Chris Surridge. [21] He was succeeded by Peter Binfield in March 2008, who was publisher until May 2012. [22] Damian Pattinson then held the chief editorial position until December 2015. [23] Joerg Heber was as editor-in-chief from November 2016 [24] before Emily Chenette took over in that position in March 2021. [25]

Publication concept

PLOS One is built on several conceptually different ideas compared to traditional peer-reviewed scientific publishing in that it does not use the perceived importance of a paper as a criterion for acceptance or rejection. The idea is that, instead, PLOS One only verifies whether experiments and data analysis were conducted rigorously, and leaves it to the scientific community to ascertain importance, post publication, through debate and comment. [26]

Each submission will be assessed by a member of the PLOS ONE Editorial Board before publication. This pre-publication peer review will concentrate on technical rather than subjective concerns and may involve discussion with other members of the Editorial Board and/or the solicitation of formal reports from independent referees. If published, papers will be made available for community-based open peer review involving online annotation, discussion, and rating. [27]

According to Nature , the journal's aim is to "challenge academia's obsession with journal status and impact factors". [28] Being an online-only publication allows PLOS One to publish more papers than a print journal. In an effort to facilitate publication of research on topics outside, or between, traditional science categories, it does not restrict itself to a specific scientific area. [26]

Papers published in PLOS One can be of any length, contain full color throughout, and contain supplementary materials such as multimedia files. Reuse of articles is subject to a Creative Commons Attribution License. In the first four years following launch, it made use of over 40,000 external peer reviewers. [29] The journal uses an international board of academic editors with over 6,000 academics handling submissions and publishes approximately 50% of all submissions, after review by, on average, 2.9 experts. [30] Registered readers can leave comments on articles on the website. [28]

Business model

A welcome message from PLoS to Nature Publishing Group on the launch of Scientific Reports, inspired by a similar message sent in 1981 by Apple to IBM upon the latter's entry into the personal computer market with its IBM Personal Computer. Welcome, Nature. Seriously. (from PLoS) (5405189157).pdf
A welcome message from PLoS to Nature Publishing Group on the launch of Scientific Reports, inspired by a similar message sent in 1981 by Apple to IBM upon the latter's entry into the personal computer market with its IBM Personal Computer.

As with all journals of the Public Library of Science, open access to PLOS One is financed by an article processing charge, typically paid by the author's institution or by the author. This model allows PLOS journals to make all articles available to the public for free immediately upon publication. As of April 2021,PLOS One charges a publication fee of $1,745 to publish an article. [33] Depending on circumstances, it may waive or reduce the fee for authors who do not have sufficient funds. [33]

PLoS had been operating at a loss until 2009 but covered its operational costs for the first time in 2010, [34] largely due to the growth of PLOS One. The success of PLOS One has inspired a series of other open access journals, [35] including some other mega journals having broad scope, low selectivity, and a pay-to-publish model using Creative Commons licenses. [36] [37]

Reception

In September 2009, PLOS One received the Publishing Innovation Award of the Association for Learned and Professional Society Publishers. [38] The award is given in recognition of a "truly innovative approach to any aspect of publication as adjudged from originality and innovative qualities, together with utility, benefit to the community and long-term prospects". In January 2010, it was announced that the journal would be included in the Journal Citation Reports , [39] and the journal received an impact factor of 4.411 in 2010. According to the Journal Citation Reports, the journal has a 2022 impact factor of 3.7. [40]

Abstracting and indexing

The articles are indexed in: [27]

Response to controversial publications

Alleged sexism in one peer review instance

On April 29, 2015, Fiona Ingleby and Megan Head, postdoctoral fellows at the University of Sussex and Australian National University respectively, posted a rejection letter, which they said was sent to them by a peer reviewer for a journal they did not wish to name. The rejection letter concerned Ingleby and Head's paper about differences in PhD-to-postdoc transition between male and female scientists. The reviewer argued that the authors should "find one or two male biologists to work with" to ensure the manuscript does not drift into "ideologically biased assumptions", comments which the authors found to be "unprofessional and inappropriate" and veering into sexism. Shortly afterward, the journal was reported to be PLOS One. By May 1, PLOS had announced that it was severing ties with the reviewer responsible for the comments and asking the editor who relayed them to step down. PLOS One also issued an apology statement following the incident. [41]

CreatorGate

On March 3, 2016, the editors of PLOS One initiated a reevaluation of an article about the functioning of the human hand [42] due to outrage among the journal's readership over a reference to "Creator" inside the paper. [43] The authors, who received grants from the Chinese National Basic Research Program and National Natural Science Foundation of China for this work, responded by saying "Creator" is a poorly-translated idiom (造化(); lit.'that which creates or transforms') [44] which means "nature" in the Chinese language. Despite the authors' protests, the article was retracted. [45] A less sympathetic explanation for the use of "Creator" was suggested to The Chronicle of Higher Education by Chinese-language experts who noted that the academic editor listed on the paper, Renzhi Han, previously worked at the Chinese Evangelical Church in Iowa City. [46]

Sarah Kaplan of The Washington Post presented a detailed analysis of the problem, which she named #CreatorGate, and concluded that the journal's hasty retraction may have been an even bigger offense than the publication of the paper in the first place. [47] To contrast PLOS One's handling of the problem, she used a 12-year history of retraction of the fraudulent paper on vaccine and autism by The Lancet and the lack of a retraction of a debunked study on "arsenic life" by Science . [48] [49] Others added the history of the article in Nature on "water memory" that was not retracted either. [50]

Jonathan Eisen, chair of the advisory board of a sister journal PLOS Biology and an advocate for open-access, commended PLOS One for their prompt response on social media, which in his words "most journals pretend doesn't even exist". [51] David Knutson issued a statement about the paper processing at PLOS One, which praised the importance of post-publication peer review and described their intention to offer open signed reviews in order to ensure accountability of the process. [52] From March 2 to 9, the research article received a total of 67 post-publication reader comments and 129 responses on PLOS One site. [42] Signe Dean of SBS put #CreatorGate in perspective: it is not the most scandalous retraction in science, yet it shows how a social media outrage storm does expedite a retraction. [53]

Rapid-onset gender dysphoria controversy

On August 27, 2018, the editors of PLOS One initiated a reevaluation of an article they published two weeks earlier submitted by Brown University School of Public Health assistant professor Lisa Littman. [54] The study described a phenomenon of social contagion, or "cluster outbreaks" in gender dysphoria among young people, which Littman called "rapid-onset gender dysphoria". [54] Data was obtained from a survey placed on three websites for concerned parents of children with gender dysphoria, asking for responses from parents whose children had experienced "sudden or rapid development of gender dysphoria beginning between the ages of 10 and 21". [55] The study was criticized by transgender activists like Julia Serano and medical professionals like developmental and clinical psychologist Diane Ehrensaft, as being politicized and having self-selected samples, as well as lacking clinical data or responses from the adolescents themselves. [56] [57]

On March 19, 2019, PLOS One completed its review. PLOS One psychology academic editor Angelo Brandelli Costa acted as a reviewer criticizing the methods and conclusion of the study in a formal comment, saying, "The level of evidence produced by the Dr. Littman's study cannot generate a new diagnostic criterion relative to the time of presentation of the demands of medical and social gender affirmation." [58] In a separate letter apologizing for the failure of peer review to address the issues with the article, PLOS One Editor-in-chief Joerg Heber said, "we have reached the conclusion that the study and resultant data reported in the article represent a valid contribution to the scientific literature. However, we have also determined that the study, including its goals, methodology, and conclusions, were not adequately framed in the published version, and that these needed to be corrected." [59]

The paper was republished with updated Title, Abstract, Introduction, Methodology, Discussion, and Conclusion sections, but the Results section was mostly unchanged. In her correction, Littman emphasized that the article was "a study of parental observations which serves to develop hypotheses", saying "Rapid-onset gender dysphoria (ROGD) is not a formal mental health diagnosis at this time. This report did not collect data from the adolescents and young adults (AYAs) or clinicians and therefore does not validate the phenomenon. Additional research that includes AYAs, along with consensus among experts in the field, will be needed to determine if what is described here as rapid-onset gender dysphoria (ROGD) will become a formal diagnosis." [54]

Related Research Articles

<span class="mw-page-title-main">Scientific journal</span> Periodical journal publishing scientific research

In academic publishing, a scientific journal is a periodical publication intended to further the progress of science, usually by sharing findings from research with readers. They are normally specialized based on discipline, with authors picking which one they send their manuscripts to.

<span class="mw-page-title-main">Academic publishing</span> Subfield of publishing distributing academic research and scholarship

Academic publishing is the subfield of publishing which distributes academic research and scholarship. Most academic work is published in academic journal articles, books or thesis. The part of academic written output that is not formally published but merely printed up or posted on the Internet is often called "grey literature". Most scientific and scholarly journals, and many academic and scholarly books, though not all, are based on some form of peer review or editorial refereeing to qualify texts for publication. Peer review quality and selectivity standards vary greatly from journal to journal, publisher to publisher, and field to field.

<i>The Lancet</i> Peer-reviewed general medical journal

The Lancet is a weekly peer-reviewed general medical journal and one of the oldest of its kind. It is also the world's highest-impact academic journal. It was founded in England in 1823.

In academic publishing, a retraction is a mechanism by which a published paper in an academic journal is flagged for being seriously flawed to the extent that their results and conclusions can no longer be relied upon. Retracted articles are not removed from the published literature but marked as retracted. In some cases it may be necessary to remove an article from publication, such as when the article is clearly defamatory, violates personal privacy, is the subject of a court order, or might pose a serious health risk to the general public.

PLOS Computational Biology is a monthly peer-reviewed open access scientific journal covering computational biology. It was established in 2005 by the Public Library of Science in association with the International Society for Computational Biology (ISCB) in the same format as the previously established PLOS Biology and PLOS Medicine. The founding editor-in-chief was Philip Bourne and the current ones are Feilim Mac Gabhann and Jason Papin.

<span class="mw-page-title-main">Hindawi (publisher)</span> Scientific and medical journal publisher

Hindawi is a publisher of peer-reviewed, open access, scientific journals currently active in scientific, technical, and medical (STM) literature. It was founded in 1997 in Cairo, Egypt, and purchased in 2021 for $298 million by John Wiley & Sons, a large US-based publishing company. The publisher has been classified as a predatory publisher. After almost 10,000 article retractions in 2023, Wiley announced that it would cease using the Hindawi brand.

MDPI is a publisher of open-access scientific journals. It publishes over 390 peer-reviewed, open access journals. MDPI is among the largest publishers in the world in terms of journal article output, and is the largest publisher of open access articles.

Journal of Physics: Conference Series (JPCS) is a peer-reviewed, open-access publication from IOP Publishing providing readers with the latest developments in physics presented at international conferences.

Open peer review is the various possible modifications of the traditional scholarly peer review process. The three most common modifications to which the term is applied are:

  1. Open identities: Authors and reviewers are aware of each other's identity.
  2. Open reports: Review reports are published alongside the relevant article.
  3. Open participation: The wider community are able to contribute to the review process.
<i>Virology Journal</i> Academic journal

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Scholarly peer review or academic peer review is the process of having a draft version of a researcher's methods and findings reviewed by experts in the same field. Peer review is widely used for helping the academic publisher decide whether the work should be accepted, considered acceptable with revisions, or rejected for official publication in an academic journal, a monograph or in the proceedings of an academic conference. If the identities of authors are not revealed to each other, the procedure is called dual-anonymous peer review.

Frontiers Media SA is a publisher of peer-reviewed, open access, scientific journals currently active in science, technology, and medicine. It was founded in 2007 by Kamila and Henry Markram. Frontiers is based in Lausanne, Switzerland, with other offices in the United Kingdom, Spain, and China. In 2022, Frontiers employed more than 1,400 people, across 14 countries. All Frontiers journals are published under a Creative Commons Attribution License.

<i>PeerJ</i> Academic journal

PeerJ is an open access peer-reviewed scientific mega journal covering research in the biological and medical sciences. It is published by a company of the same name that was co-founded by CEO Jason Hoyt and publisher Peter Binfield, with initial financial backing of US$950,000 from O'Reilly Media's O'Reilly AlphaTech Ventures, and later funding from Sage Publishing.

<span class="mw-page-title-main">Predatory publishing</span> Fraudulent business model for scientific publications

Predatory publishing, also write-only publishing or deceptive publishing, is an exploitative academic publishing business model that involves charging publication fees to authors while only superficially checking articles for quality and legitimacy, and without providing editorial and publishing services that legitimate academic journals provide, whether open access or not. The rejection rate of predatory journals is low, but seldom zero. The phenomenon of "open access predatory publishers" was first noticed by Jeffrey Beall, when he described "publishers that are ready to publish any article for payment". However, criticisms about the label "predatory" have been raised. A lengthy review of the controversy started by Beall appears in The Journal of Academic Librarianship.

<span class="mw-page-title-main">Who's Afraid of Peer Review?</span> Science article by John Bohannon

"Who's Afraid of Peer Review?" is an article written by Science correspondent John Bohannon that describes his investigation of peer review among fee-charging open-access journals. Between January and August 2013, Bohannon submitted fake scientific papers to 304 journals owned by fee-charging open access publishers. The papers, writes Bohannon, "were designed with such grave and obvious scientific flaws that they should have been rejected immediately by editors and peer reviewers", but 60% of the journals accepted them. The article and associated data were published in the 4 October 2013 issue of Science as open access.

A mega journal is a peer-reviewed academic open access journal designed to be much larger than a traditional journal by exercising low selectivity among accepted articles. It was pioneered by PLOS ONE. This "very lucrative publishing model" was soon emulated by other publishers.

Tumor Biology is a bimonthly peer-reviewed open access medical journal covering clinical and experimental oncology. It was established in 1980 as Oncodevelopmental Biology and Medicine, obtaining its current name in 1984. It is owned by the International Society of Oncology and BioMarkers, of which it is the official journal. Originally published by Karger Publishers, it moved to Springer Science+Business Media beginning in 2010. In December 2016, the journal moved again, this time to SAGE Publications. The editor-in-chief is Magdalena Chechlinska. According to the Journal Citation Reports, the journal has a 2016 impact factor of 3.650.

<span class="mw-page-title-main">Conflicts of interest in academic publishing</span>

Conflicts of interest (COIs) often arise in academic publishing. Such conflicts may cause wrongdoing and make it more likely. Ethical standards in academic publishing exist to avoid and deal with conflicts of interest, and the field continues to develop new standards. Standards vary between journals and are unevenly applied. According to the International Committee of Medical Journal Editors, "[a]uthors have a responsibility to evaluate the integrity, history, practices and reputation of the journals to which they submit manuscripts".

Controversy surrounds the concept of rapid-onset gender dysphoria (ROGD), a scientifically unsupported proposed subtype of gender dysphoria said to be caused by peer influence and social contagion. ROGD has not been recognized by any major professional association as a valid mental health diagnosis, and use of the term has been discouraged by professional and academic institutions due to a lack of reputable scientific evidence, major methodological issues in existing research, and likelihood to cause harm by stigmatizing gender-affirming care.

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