TARBP2

Last updated
TARBP2
Protein TARBP2 PDB 2cpn.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases TARBP2 , LOQS, TRBP, TRBP1, TRBP2, RISC loading complex RNA binding subunit, TARBP2 subunit of RISC loading complex
External IDs OMIM: 605053 MGI: 103027 HomoloGene: 7562 GeneCards: TARBP2
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_004178
NM_134323
NM_134324

NM_001253795
NM_009319

RefSeq (protein)

NP_004169
NP_599150
NP_599151

NP_001240724
NP_033345

Location (UCSC) Chr 12: 53.5 – 53.51 Mb Chr 15: 102.43 – 102.43 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

RISC-loading complex subunit TARBP2 is a protein that in humans is encoded by the TARBP2 gene. [5] [6]

Contents

Function

HIV-1, the causative agent of acquired immunodeficiency syndrome (AIDS), contains an RNA genome that produces a chromosomally integrated DNA during the replicative cycle. Activation of HIV-1 gene expression by the transactivator Tat is dependent on an RNA regulatory element (TAR) located downstream of the transcription initiation site. The protein encoded by this gene binds between the bulge and the loop of the HIV-1 TAR RNA regulatory element and activates HIV-1 gene expression in synergy with the viral Tat protein. Alternative splicing results in multiple transcript variants encoding different isoforms. This gene also has a pseudogene. [6]

Interactions

TARBP2 has been shown to interact with Protein kinase R [7] [8] and RBM14. [9]

Related Research Articles

<span class="mw-page-title-main">Androgen receptor</span> Mammalian protein found in Homo sapiens

The androgen receptor (AR), also known as NR3C4, is a type of nuclear receptor that is activated by binding any of the androgenic hormones, including testosterone and dihydrotestosterone in the cytoplasm and then translocating into the nucleus. The androgen receptor is most closely related to the progesterone receptor, and progestins in higher dosages can block the androgen receptor.

<span class="mw-page-title-main">Protein kinase R</span> Protein-coding gene in the species Homo sapiens

Protein kinase RNA-activated also known as protein kinase R (PKR), interferon-induced, double-stranded RNA-activated protein kinase, or eukaryotic translation initiation factor 2-alpha kinase 2 (EIF2AK2) is an enzyme that in humans is encoded by the EIF2AK2 gene.

<span class="mw-page-title-main">Transcription factor Jun</span> Mammalian protein found in Homo sapiens

Transcription factor Jun is a protein that in humans is encoded by the JUN gene. c-Jun, in combination with protein c-Fos, forms the AP-1 early response transcription factor. It was first identified as the Fos-binding protein p39 and only later rediscovered as the product of the JUN gene. c-jun was the first oncogenic transcription factor discovered. The proto-oncogene c-Jun is the cellular homolog of the viral oncoprotein v-jun. The viral homolog v-jun was discovered in avian sarcoma virus 17 and was named for ju-nana, the Japanese word for 17. The human JUN encodes a protein that is highly similar to the viral protein, which interacts directly with specific target DNA sequences to regulate gene expression. This gene is intronless and is mapped to 1p32-p31, a chromosomal region involved in both translocations and deletions in human malignancies.

<span class="mw-page-title-main">Cyclin-dependent kinase 9</span> Protein-coding gene in the species Homo sapiens

Cyclin-dependent kinase 9 or CDK9 is a cyclin-dependent kinase associated with P-TEFb.

<span class="mw-page-title-main">RELA</span> Protein-coding gene in the species Homo sapiens

Transcription factor p65 also known as nuclear factor NF-kappa-B p65 subunit is a protein that in humans is encoded by the RELA gene.

<span class="mw-page-title-main">Cyclin T1</span>

Cyclin-T1 is a protein that in humans is encoded by the CCNT1 gene.

<span class="mw-page-title-main">POLR2C</span> Protein-coding gene in the species Homo sapiens

DNA-directed RNA polymerase II subunit RPB3 is an enzyme that in humans is encoded by the POLR2C gene.

<span class="mw-page-title-main">POLR2E</span> Protein-coding gene in the species Homo sapiens

DNA-directed RNA polymerases I, II, and III subunit RPABC1 is a protein that in humans is encoded by the POLR2E gene.

<span class="mw-page-title-main">POLR2B</span>

DNA-directed RNA polymerase II subunit RPB2 is an enzyme that in humans is encoded by the POLR2B gene.

<span class="mw-page-title-main">POLR2H</span>

DNA-directed RNA polymerases I, II, and III subunit RPABC3 is a protein that in humans is encoded by the POLR2H gene.

<span class="mw-page-title-main">POLR2F</span>

DNA-directed RNA polymerases I, II, and III subunit RPABC2 is a protein that in humans is encoded by the POLR2F gene.

<span class="mw-page-title-main">POLR2L</span>

DNA-directed RNA polymerases I, II, and III subunit RPABC5 is a protein that in humans is encoded by the POLR2L gene.

<span class="mw-page-title-main">POLR2J</span>

DNA-directed RNA polymerase II subunit RPB11-a is an enzyme that in humans is encoded by the POLR2J gene.

<span class="mw-page-title-main">RNA polymerase II subunit B4</span>

DNA-directed RNA polymerase II subunit RPB4 is an enzyme that in humans is encoded by the POLR2D gene.

<span class="mw-page-title-main">POLR2I</span> Protein-coding gene in the species Homo sapiens

DNA-directed RNA polymerase II subunit RPB9 is an enzyme that in humans is encoded by the POLR2I gene.

<span class="mw-page-title-main">ILF3</span> Protein-coding gene in the species Homo sapiens

Interleukin enhancer-binding factor 3 is a protein that in humans is encoded by the ILF3 gene.

<span class="mw-page-title-main">Cyclin H</span> Protein-coding gene in the species Homo sapiens

Cyclin-H is a protein that in humans is encoded by the CCNH gene.

<span class="mw-page-title-main">Cyclin K</span> Protein-coding gene in the species Homo sapiens

Cyclin-K is a protein that in humans is encoded by the CCNK gene.

<span class="mw-page-title-main">TARBP1</span> Protein-coding gene in the species Homo sapiens

Probable methyltransferase TARBP1 is an enzyme that in humans is encoded by the TARBP1 gene.

Tat (HIV)

In molecular biology, Tat is a protein that is encoded for by the tat gene in HIV-1. Tat is a regulatory protein that drastically enhances the efficiency of viral transcription. Tat stands for "Trans-Activator of Transcription". The protein consists of between 86 and 101 amino acids depending on the subtype. Tat vastly increases the level of transcription of the HIV dsDNA. Before Tat is present, a small number of RNA transcripts will be made, which allow the Tat protein to be produced. Tat then binds to cellular factors and mediates their phosphorylation, resulting in increased transcription of all HIV genes, providing a positive feedback cycle. This in turn allows HIV to have an explosive response once a threshold amount of Tat is produced, a useful tool for defeating the body's response.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000139546 - Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000023051 - Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Gatignol A, Buckler-White A, Berkhout B, Jeang KT (Mar 1991). "Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR". Science. 251 (5001): 1597–600. Bibcode:1991Sci...251.1597G. doi:10.1126/science.2011739. PMID   2011739.
  6. 1 2 "Entrez Gene: TARBP2 Tar (HIV-1) RNA binding protein 2".
  7. Cosentino GP, Venkatesan S, Serluca FC, Green SR, Mathews MB, Sonenberg N (Oct 1995). "Double-stranded-RNA-dependent protein kinase and TAR RNA-binding protein form homo- and heterodimers in vivo". Proceedings of the National Academy of Sciences of the United States of America. 92 (21): 9445–9. Bibcode:1995PNAS...92.9445C. doi: 10.1073/pnas.92.21.9445 . PMC   40818 . PMID   7568151.
  8. Daher A, Longuet M, Dorin D, Bois F, Segeral E, Bannwarth S, Battisti PL, Purcell DF, Benarous R, Vaquero C, Meurs EF, Gatignol A (Sep 2001). "Two dimerization domains in the trans-activation response RNA-binding protein (TRBP) individually reverse the protein kinase R inhibition of HIV-1 long terminal repeat expression". The Journal of Biological Chemistry. 276 (36): 33899–905. doi: 10.1074/jbc.M103584200 . PMID   11438532.
  9. Iwasaki T, Chin WW, Ko L (Sep 2001). "Identification and characterization of RRM-containing coactivator activator (CoAA) as TRBP-interacting protein, and its splice variant as a coactivator modulator (CoAM)". The Journal of Biological Chemistry. 276 (36): 33375–83. doi: 10.1074/jbc.M101517200 . PMID   11443112.

Further reading