AgBase

Last updated
AgBase
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Content
Descriptionfunctional genomics resource for agriculture.
Contact
Research center University of Arizona
AuthorsFiona M McCarthy
Primary citationMcCarthy & al. (2006) [1]
Release date2006
Access
Website https://agbase.arizona.edu/

AgBase is a curated genomic database containing functional annotations of agriculturally important animals, plants, microbes and parasites. [1] AgBase biocurators provides annotation of Gene Ontology terms and Plant ontology terms for gene products. [2] By 2011 AgBase provided information for 18 organisms including horse, cat, dog, cotton, rice and soybean. [3]

Contents

See also

References

  1. 1 2 McCarthy, Fiona M; Wang Nan; Magee G Bryce; Nanduri Bindu; Lawrence Mark L; Camon Evelyn B; Barrell Daniel G; Hill David P; Dolan Mary E; Williams W Paul; Luthe Dawn S; Bridges Susan M; Burgess Shane C (2006). "AgBase: a functional genomics resource for agriculture". BMC Genomics. 7. England: 229. doi: 10.1186/1471-2164-7-229 . PMC   1618847 . PMID   16961921.
  2. ↑ Pillai, L; Chouvarine, P; Tudor, C. O.; Schmidt, C. J.; Vijay-Shanker, K; McCarthy, F. M. (2012). "Developing a biocuration workflow for Ag Base, a non-model organism database". Database. 2012: bas038. doi:10.1093/database/bas038. PMC   3500517 . PMID   23160411.
  3. ↑ McCarthy, F. M.; Gresham, C. R.; Buza, T. J.; Chouvarine, P; Pillai, L. R.; Kumar, R; Ozkan, S; Wang, H; Manda, P; Arick, T; Bridges, S. M.; Burgess, S. C. (2011). "Ag Base: Supporting functional modeling in agricultural organisms". Nucleic Acids Research. 39 (Database issue): D497–506. doi:10.1093/nar/gkq1115. PMC   3013706 . PMID   21075795.


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