Ciliate MDS/IES database

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MDS_IES_DB
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DescriptionDatabase of macronuclear and micronuclear genes in spirotrichous ciliates.
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Research center Princeton University
Laboratory Department of Ecology and Evolutionary Biology
Primary citation PMID   15608224
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Website http://oxytricha.princeton.edu/dimorphism/database.htm

In Bioinformatics the Ciliate MDS/IES database is a biological database of spirotrich genes. [1]

Bioinformatics Software tools for understanding biological data

Bioinformatics is an interdisciplinary field that develops methods and software tools for understanding biological data. As an interdisciplinary field of science, bioinformatics combines biology, computer science, information engineering, mathematics and statistics to analyze and interpret biological data. Bioinformatics has been used for in silico analyses of biological queries using mathematical and statistical techniques.

Biological database database of biological information

Biological databases are libraries of life sciences information, collected from scientific experiments, published literature, high-throughput experiment technology, and computational analysis. They contain information from research areas including genomics, proteomics, metabolomics, microarray gene expression, and phylogenetics. Information contained in biological databases includes gene function, structure, localization, clinical effects of mutations as well as similarities of biological sequences and structures.

Spirotrich class of protozoans

The spirotrichs are a large and diverse group of ciliate protozoa. They typically have prominent oral cilia in the form of a series of polykinetids, called the adoral zone of membranelles, beginning anterior to the oral cavity and running down to the left side of the mouth. There may also be one or two paroral membranes on its right side. The body cilia are fused to form polykinetids called cirri in some, and are sparse to absent in others.

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Heterotrich class of protozoans

The heterotrichs are a class of ciliates. They typically have a prominent adoral zone of membranelles circling the mouth, used in locomotion and feeding, and shorter cilia on the rest of the body. Many species are highly contractile, and are typically compressed or conical in form. These include some of the largest protozoa, such as Stentor and Spirostomum, as well as many brightly pigmented forms, such as certain Blepharisma.

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Oligohymenophorea class of protozoans

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Litostomatea class of ciliate protists

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Hypotrich subclass of protozoans


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Stichotrich subclass of protozoans

The stichotrichs are a group of ciliates, included among the spirotrichs. Like the hypotrichs, with which they were originally classified, they have body cilia fused into cirri, but these are mostly arranged into rows, running along the ventral surface or edges of the cell. Most stichotrichs are flattened and reasonably flexible. Stylonychia and Oxytricha are representative genera. Some evidence suggests that the hypotrichs may be paraphyletic to them, and that they in turn may be paraphyletic to the oligotrichs.

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<i>Chilodonella uncinata</i> species of protozoan

Chilodonella uncinata is a single-celled organism of the ciliate class of alveoles. As a ciliate, C. uncinata has cilia covering its body and a dual nuclear structure, the micronucleus and macronucleus. Unlike some other ciliates, C. uncinata contains millions of minichromosomes in its macronucleus while its micronucleus is estimated to contain 3 chromosomes. Childonella uncinata is the causative agent of Chilodonelloza, a disease that affects the gills and skin of fresh water fish, and may act as a faculitative parasite of mosquito larva.

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<i>Colpidium colpoda</i> species of protozoan

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References

  1. Cavalcanti, Andre R O; Clarke Thomas H; Landweber Laura F (Jan 2005). "MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates". Nucleic Acids Res. England. 33 (Database issue): D396–8. doi:10.1093/nar/gki130. PMC   540084 . PMID   15608224.