DGCR5

Last updated
DGCR5
Identifiers
Aliases DGCR5 , LINC00037, NCRNA00037, DiGeorge syndrome critical region gene 5 (non-protein coding), DiGeorge syndrome critical region gene 5
External IDs OMIM: 618040 GeneCards: DGCR5
Gene location (Human)
Ideogram human chromosome 22.svg
Chr. Chromosome 22 (human) [1]
Human chromosome 22 ideogram.svg
HSR 1996 II 3.5e.svg
Red rectangle 2x18.png
Band 22q11.21Start18,970,525 bp [1]
End19,031,242 bp [1]
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

n/a

n/a

RefSeq (protein)

n/a

n/a

Location (UCSC) Chr 22: 18.97 – 19.03 Mb n/a
PubMed search [2] n/a
Wikidata
View/Edit Human

In molecular biology, DiGeorge syndrome critical region gene 5 (non-protein coding), also known as DGCR5, is a long non-coding RNA. In humans, it is located on chromosome 22q11, at the ADU breakpoint associated with DiGeorge syndrome. [3] Its expression is regulated by the transcription factor REST (RE1-Silencing Transcription factor). [4]

Contents

See also

Related Research Articles

Human genome Complete set of nucleic acid sequences for humans

The human genome is a complete set of nucleic acid sequences for humans, encoded as DNA within the 23 chromosome pairs in cell nuclei and in a small DNA molecule found within individual mitochondria. These are usually treated separately as the nuclear genome, and the mitochondrial genome. Human genomes include both protein-coding DNA genes and noncoding DNA. Haploid human genomes, which are contained in germ cells consist of three billion DNA base pairs, while diploid genomes have twice the DNA content. While there are significant differences among the genomes of human individuals, these are considerably smaller than the differences between humans and their closest living relatives, the bonobos and chimpanzees.

Non-coding RNA Class of ribonucleic acid that is not translated into proteins

A non-coding RNA (ncRNA) is an RNA molecule that is not translated into a protein. The DNA sequence from which a functional non-coding RNA is transcribed is often called an RNA gene. Abundant and functionally important types of non-coding RNAs include transfer RNAs (tRNAs) and ribosomal RNAs (rRNAs), as well as small RNAs such as microRNAs, siRNAs, piRNAs, snoRNAs, snRNAs, exRNAs, scaRNAs and the long ncRNAs such as Xist and HOTAIR.

Chromosome 22

Chromosome 22 is one of the 23 pairs of chromosomes in human cells. Humans normally have two copies of chromosome 22 in each cell. Chromosome 22 is the second smallest human chromosome, spanning about 49 million DNA base pairs and representing between 1.5 and 2% of the total DNA in cells.

Treacle protein

Treacle protein is a protein that in humans is encoded by the TCOF1 gene.

TBX1

T-box transcription factor TBX1 also known as T-box protein 1 and testis-specific T-box protein is a protein that in humans is encoded by the TBX1 gene. Genes in the T-box family are transcription factors that play important roles in the formation of tissues and organs during embryonic development. To carry out these roles, proteins made by this gene family bind to specific areas of DNA called T-box binding element (TBE) to control the expression of target genes.

ILF3

Interleukin enhancer-binding factor 3 is a protein that in humans is encoded by the ILF3 gene.

GPR22

Probable G-protein coupled receptor 22 is a protein that in humans is encoded by the GPR22 gene.

SON (gene)

SON protein is a protein that in humans is encoded by the SON gene.

GTF2IRD1

General transcription factor II-I repeat domain-containing protein 1 is a protein that in humans is encoded by the GTF2IRD1 gene.

WHSC1

Probable histone-lysine N-methyltransferase NSD2 is an enzyme that in humans is encoded by the WHSC1 gene.

WHSC2

Negative elongation factor A is a protein that in humans is encoded by the WHSC2 gene.

<i>NFIC</i> (gene)

Nuclear factor 1 C-type is a protein that in humans is encoded by the NFIC gene.

NFIA

Nuclear factor 1 A-type is a protein that in humans is encoded by the NFIA gene.

Sp2 transcription factor

Transcription factor Sp2 is a protein that in humans is encoded by the SP2 gene.

DGCR14

Protein DGCR14 is a protein that in humans is encoded by the DGCR14 gene.

ZNF74

Zinc finger protein 74 is a protein that in humans is encoded by the ZNF74 gene. Schizophrenia susceptibility has been associated with a mutation in this protein.

Carbohydrate-responsive element-binding protein

Carbohydrate-responsive element-binding protein (ChREBP) also known as MLX-interacting protein-like (MLXIPL) is a protein that in humans is encoded by the MLXIPL gene. The protein name derives from the protein's interaction with carbohydrate response element sequences of DNA.

MRPS22

28S ribosomal protein S22, mitochondrial is a protein that in humans is encoded by the MRPS22 gene.

Long non-coding RNAs are a type of RNA, defined as being transcripts with lengths exceeding 200 nucleotides that are not translated into protein. This somewhat arbitrary limit distinguishes long ncRNAs from small non-coding RNAs such as microRNAs (miRNAs), small interfering RNAs (siRNAs), Piwi-interacting RNAs (piRNAs), small nucleolar RNAs (snoRNAs), and other short RNAs. Long intervening/intergenic noncoding RNAs (lincRNAs) are sequences of lncRNA which do not overlap protein-coding genes.

LZTR1

Leucine-zipper-like transcriptional regulator 1 is a protein that in humans is encoded by the LZTR1 gene.

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000273032 - Ensembl, May 2017
  2. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. Sutherland HF, Wadey R, McKie JM, Taylor C, Atif U, Johnstone KA, Halford S, Kim UJ, Goodship J, Baldini A, Scambler PJ (Jul 1996). "Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome". American Journal of Human Genetics. 59 (1): 23–31. PMC   1915101 . PMID   8659529.
  4. Johnson R, Teh CH, Jia H, Vanisri RR, Pandey T, Lu ZH, Buckley NJ, Stanton LW, Lipovich L (Jan 2009). "Regulation of neural macroRNAs by the transcriptional repressor REST". RNA. 15 (1): 85–96. doi:10.1261/rna.1127009. PMC   2612765 . PMID   19050060.

Further reading