Global Infectious Disease Epidemiology Network

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Global Infectious Diseases and Epidemiology Online Network (GIDEON) is a web-based program for decision support and informatics in the fields of Infectious Diseases and Geographic Medicine. [1] Due to the advancement of both disease research and digital media, print media can no longer follow the dynamics of outbreaks and epidemics as they emerge in "real time." As of 2005, more than 300 generic infectious diseases occur haphazardly in time and space and are challenged by over 250 drugs and vaccines. 1,500 species of pathogenic bacteria, viruses, parasites and fungi have been described. GIDEON works to combat this by creating a diagnosis through geographical indicators, [2] a map of the status of the disease in history, a detailed list of potential vaccines and treatments, [3] and finally listing all the potential species of the disease or outbreak such as bacterial classifications.

Organization

GIDEON consists of four modules. The first Diagnosis module generates a Bayesian ranked differential diagnosis based on signs, symptoms, laboratory tests, country of origin and incubation period – and can be used for diagnosis support and simulation of all infectious diseases in all countries. Since the program is web-based, this module can also be adapted to disease and bioterror surveillance.

The second module follows the epidemiology of individual diseases, including their global background and status in each of 205 countries and regions. All past and current outbreaks of all diseases, in all countries, are described in detail. The user may also access a list of diseases compatible with any combination of agent, vector, vehicle, reservoir and country (for example, one could list all the mosquito-borne flaviviruses of Brazil which have an avian reservoir). Over 30,000 graphs display all the data, and are updated in "real time". These graphs can be used for preparation of PowerPoint displays, pamphlets, lecture notes, etc. Several thousand high-quality images are also available, including clinical lesions, roentgenograms, Photomicrographs and disease life cycles.

The third module is an interactive encyclopedia which incorporates the pharmacology, usage, testing standards and global trade names of all antiinfective drugs and vaccines.

The fourth module is designed to identify or characterize all species of bacteria, mycobacteria and yeasts. The database includes 50 to 100 taxa which may not appear in standard texts and laboratory databases for several months.

Additional options allow users to add data (in their own font / language) relevant to their own institution, electronic patient charts, material from the internet, important telephone numbers, drug prices, antimicrobial resistance patterns, etc. This form of custom data is particularly useful when running GIDEON on institutional networks. The data in GIDEON are derived from:

Related Research Articles

<span class="mw-page-title-main">Antibiotic</span> Antimicrobial substance active against bacteria

An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting bacterial infections, and antibiotic medications are widely used in the treatment and prevention of such infections. They may either kill or inhibit the growth of bacteria. A limited number of antibiotics also possess antiprotozoal activity. Antibiotics are not effective against viruses such as the ones which cause the common cold or influenza; drugs which inhibit growth of viruses are termed antiviral drugs or antivirals rather than antibiotics. They are also not effective against fungi; drugs which inhibit growth of fungi are called antifungal drugs.

<span class="mw-page-title-main">Antimicrobial resistance</span> Resistance of microbes to drugs directed against them

Antimicrobial resistance (AMR) occurs when microbes evolve mechanisms that protect them from the effects of antimicrobials. All classes of microbes can evolve resistance where the drugs are no longer effective. Fungi evolve antifungal resistance, viruses evolve antiviral resistance, protozoa evolve antiprotozoal resistance, and bacteria evolve antibiotic resistance. Together all of these come under the umbrella of antimicrobial resistance. Microbes resistant to multiple antimicrobials are called multidrug resistant (MDR) and are sometimes referred to as superbugs. Although antimicrobial resistance is a naturally occurring process, it is often the result of improper usage of the drugs and management of the infections.

<span class="mw-page-title-main">Plague (disease)</span> Disease caused by Yersinia pestis bacterium

Plague is an infectious disease caused by the bacterium Yersinia pestis. Symptoms include fever, weakness and headache. Usually this begins one to seven days after exposure. There are three forms of plague, each affecting a different part of the body and causing associated symptoms. Pneumonic plague infects the lungs, causing shortness of breath, coughing and chest pain; bubonic plague affects the lymph nodes, making them swell; and septicemic plague infects the blood and can cause tissues to turn black and die.

<span class="mw-page-title-main">Cholera</span> Bacterial infection of the small intestine

Cholera is an infection of the small intestine by some strains of the bacterium Vibrio cholerae. Symptoms may range from none, to mild, to severe. The classic symptom is large amounts of watery diarrhea lasting a few days. Vomiting and muscle cramps may also occur. Diarrhea can be so severe that it leads within hours to severe dehydration and electrolyte imbalance. This may result in sunken eyes, cold skin, decreased skin elasticity, and wrinkling of the hands and feet. Dehydration can cause the skin to turn bluish. Symptoms start two hours to five days after exposure.

<span class="mw-page-title-main">Infection</span> Invasion of an organisms body by pathogenic agents

An infection is the invasion of tissues by pathogens, their multiplication, and the reaction of host tissues to the infectious agent and the toxins they produce. An infectious disease, also known as a transmissible disease or communicable disease, is an illness resulting from an infection.

<span class="mw-page-title-main">Epidemic</span> Rapid spread of disease affecting a large number of people in a short time

An epidemic is the rapid spread of disease to a large number of hosts in a given population within a short period of time. For example, in meningococcal infections, an attack rate in excess of 15 cases per 100,000 people for two consecutive weeks is considered an epidemic.

<span class="mw-page-title-main">Shigellosis</span> Medical condition

Shigellosis is an infection of the intestines caused by Shigella bacteria. Symptoms generally start one to two days after exposure and include diarrhea, fever, abdominal pain, and feeling the need to pass stools even when the bowels are empty. The diarrhea may be bloody. Symptoms typically last five to seven days and it may take several months before bowel habits return entirely to normal. Complications can include reactive arthritis, sepsis, seizures, and hemolytic uremic syndrome.

<span class="mw-page-title-main">Melioidosis</span> Human disease

Melioidosis is an infectious disease caused by a gram-negative bacterium called Burkholderia pseudomallei. Most people exposed to B. pseudomallei experience no symptoms; however, those who do experience symptoms have signs and symptoms that range from mild, such as fever and skin changes, to severe with pneumonia, abscesses, and septic shock that could cause death. Approximately 10% of people with melioidosis develop symptoms that last longer than two months, termed "chronic melioidosis".

<i>Klebsiella pneumoniae</i> Species of bacterium

Klebsiella pneumoniae is a Gram-negative, non-motile, encapsulated, lactose-fermenting, facultative anaerobic, rod-shaped bacterium. It appears as a mucoid lactose fermenter on MacConkey agar.

<span class="mw-page-title-main">Leptospirosis</span> Blood infection caused by bacteria

Leptospirosis is a blood infection caused by the bacteria Leptospira that can infect humans, dogs, rodents and many other wild and domesticated animals. Signs and symptoms can range from none to mild to severe. Weil's disease, the acute, severe form of leptospirosis, causes the infected individual to become jaundiced, develop kidney failure, and bleed. Bleeding from the lungs associated with leptospirosis is known as severe pulmonary haemorrhage syndrome.

<span class="mw-page-title-main">Gastroenteritis</span> Inflammation of the stomach and small intestine

Gastroenteritis, also known as infectious diarrhea or simply as gastro, is an inflammation of the gastrointestinal tract including the stomach and intestine. Symptoms may include diarrhea, vomiting, and abdominal pain. Fever, lack of energy, and dehydration may also occur. This typically lasts less than two weeks. Although it is not related to influenza, in the U.S. it is sometimes called the "stomach flu".

Disease Informatics (also infectious disease informatics) studies the knowledge production, sharing, modeling, and management of infectious diseases. It became a more studied field as a by-product of the rapid increases in the amount of biomedical and clinical data widely available, and to meet the demands for useful data analyses of such data.

<span class="mw-page-title-main">Infectious Diseases Society of America</span> Medical association

The Infectious Diseases Society of America (IDSA) is a medical association representing physicians, scientists, and other healthcare professionals who specialize in infectious diseases. It was founded in 1963 and is based in Arlington, Virginia. As of 2018, IDSA had more than 11,000 members from across the United States and nearly 100 other countries on six different continents. IDSA's purpose is to improve the health of individuals, communities, and society by promoting excellence in patient care, education, research, public health, and prevention relating to infectious diseases. It is a 501(c)(6) organization.

<span class="mw-page-title-main">Medical microbiology</span> Branch of medical science

Medical microbiology, the large subset of microbiology that is applied to medicine, is a branch of medical science concerned with the prevention, diagnosis and treatment of infectious diseases. In addition, this field of science studies various clinical applications of microbes for the improvement of health. There are four kinds of microorganisms that cause infectious disease: bacteria, fungi, parasites and viruses, and one type of infectious protein called prion.

The following outline is provided as an overview of and topical guide to medicine:

The genomic epidemiological database for global identification of microorganisms or global microbial identifier is a platform for storing whole genome sequencing data of microorganisms, for the identification of relevant genes and for the comparison of genomes to detect and track-and-trace infectious disease outbreaks and emerging pathogens. The database holds two types of information: 1) genomic information of microorganisms, linked to, 2) metadata of those microorganism such as epidemiological details. The database includes all genera of microorganisms: bacteria, viruses, parasites and fungi.

<span class="mw-page-title-main">Infectious diseases (medical specialty)</span> Medical specialty dealing with the diagnosis, control and treatment of infections

Infectious diseases or ID, also known as infectiology, is a medical specialty dealing with the diagnosis and treatment of infections. An infectious diseases specialist's practice consists of managing nosocomial (healthcare-acquired) infections or community-acquired infections. An ID specialist investigates and determines the cause of a disease. Once the pathogen is known, an ID specialist can then run various tests to determine the best antimicrobial drug to kill the pathogen and treat the disease. While infectious diseases have always been around, the infectious disease specialty did not exist until the late 1900s after scientists and physicians in the 19th century paved the way with research on the sources of infectious disease and the development of vaccines.

Antimicrobial stewardship is the systematic effort to educate and persuade prescribers of antimicrobials to follow evidence-based prescribing, in order to stem antimicrobial overuse, and thus antimicrobial resistance. AMS has been an organized effort of specialists in infectious diseases, both in Internal Medicine and Pediatrics with their respective peer-organizations, hospital pharmacists, the public health community and their professional organizations since the late 1990s. It has first been implemented in hospitals. In the U.S., within the context of physicians' prescribing freedom, AMS had largely been voluntary self-regulation in the form of policies and appeals to adhere to a prescribing self-discipline until 2017, when the Joint Commission prescribed that hospitals should have an Antimicrobial Stewardship team, which was expanded to the outpatient setting in 2020.

Robert Steffen is an Emeritus Professor at the Epidemiology, Biostatistics and Prevention Institute, University of Zurich, Switzerland and an adjunct professor at the University of Texas School of Public in Houston. He is an editor of the Journal of Travel Medicine.

<span class="mw-page-title-main">Ramanan Laxminarayan</span> Economist and epidemiologist

Ramanan Laxminarayan Ph.D., M.P.H., FIDSA is an economist and an epidemiologist. He is founder and director of the One Health Trust – formerly known as the Center for Disease Dynamics, Economics & Policy (CDDEP) – in Washington, D.C., and director of the World Health Organization Collaborating Center for Antimicrobial Resistance. Laxminarayan is a senior research scholar at Princeton University, an affiliate professor at the University of Washington, a senior associate at the Johns Hopkins Bloomberg School of Public Health, and a visiting professor at the University of Strathclyde. In 2023, he was appointed an honorary visiting professor at the National University of Singapore Saw Swee Hock School of Public Health. His research on epidemiological models of infectious diseases and economic analysis of drug resistance, and research on public health gets attention from leaders and policymakers worldwide. He served on the President Obama's Council of Advisors on Science and Technology’s antimicrobial resistance working group. He served as a voting member of the U.S. Presidential Advisory Council on Combating Antimicrobial Resistance from 2015 to 2023. He has served as chairperson of the Global Antibiotic Research and Development Partnership (GARDP), a not-for-profit organization dedicated to developing new antimicrobials, since its founding. GARDP was created by the World Health Organization and the Drugs for Neglected Diseases Initiative (DNDi).

References

  1. Yu, Victor L.; Edberg, Stephen C. (2005-01-01). "Global Infectious Diseases and Epidemiology Network (GIDEON): A World Wide Web-Based Program for Diagnosis and Informatics in Infectious Diseases". Clinical Infectious Diseases. 40 (1): 123–126. doi: 10.1086/426549 . ISSN   1058-4838. PMID   15614701.
  2. Smith, Katherine F.; Sax, Dov F.; Gaines, Steven D.; Guernier, Vanina; Guégan, Jean-François (2007). "Globalization of Human Infectious Disease". Ecology. 88 (8): 1903–1910. doi: 10.1890/06-1052.1 . ISSN   1939-9170. PMID   17824419.
  3. TALISUNA, Ambrose Otau; OKIRO, Emelda Aluoch; YAHAYA, Ali Ahmed; STEPHEN, Mary; BONKOUNGOU, Boukare; MUSA, Emmanuel Onuche; MINKOULOU, Etienne Magloire; OKEIBUNOR, Joseph; IMPOUMA, Benido; DJINGAREY, Haruna Mamoudou; YAO, N’da Konan Michel (2020-01-15). "Spatial and temporal distribution of infectious disease epidemics, disasters and other potential public health emergencies in the World Health Organisation Africa region, 2016–2018". Globalization and Health. 16 (1): 9. doi: 10.1186/s12992-019-0540-4 . ISSN   1744-8603. PMC   6964091 . PMID   31941554.