The Struggle for Equality: Abolitionists and the Negro in the Civil War and Reconstruction. Princeton, NJ: Princeton University Press, 1964 (1st ed.); 1995 (2nd ed., with a new preface by the author); 2014 (paperback, with a new preface by the author).
The Negro's Civil War: How American Negroes Felt and Acted During the War for the Union. New York: Pantheon Books, 1965.
Marching Toward Freedom: The Negro in the Civil War, 1861-1865. New York: Knopf, 1968 (1st ed.); New York: Facts on File, 1991 (revised and updated ed.).
The Abolitionist Legacy: From Reconstruction to the NAACP. Princeton, NJ: Princeton University Press, 1975 (1st ed.); 1995 (2nd ed., with a new preface by the author).
Ordeal by Fire: The Civil War and Reconstruction. New York: Knopf, 1982 (1st ed.); New York: McGraw-Hill, c1992 (2nd ed.); c2001 (3rd ed.), c2010 (4th ed.). ISBN9780070458376ISBN9780070458383
Lincoln and the Strategy of Unconditional Surrender. Gettysburg, PA: Gettysburg College, 1984.
How Lincoln Won the War with Metaphors. Fort Wayne, IN: Louis A. Warren Lincoln Library and Museum, 1985.
War on the Waters: The Union and Confederate Navies, 1861-1865. Chapel Hill: The University of North Carolina Press, 2012. ISBN9780807835883
Embattled Rebel: Jefferson Davis as Commander in Chief. Penguin Press, 2014. ISBN9781594204975
The War That Forged a Nation: Why the Civil War Still Matters. Oxford University Press, 2015. ISBN0199375771
As editor or contributor
Blacks in America: Bibliographical Essays by James M. McPherson and others. 1st ed. Garden City, N.Y., Doubleday, 1971.
Region, Race, and Reconstruction: Essays in Honor of C. Vann Woodward, edited by J. Morgan Kousser and James M. McPherson. New York: Oxford University Press, 1982.
Battle Chronicles of the Civil War, James McPherson, editor; Richard Gottlieb, managing editor. 6 vols. New York: Macmillan Pub. Co.; London: Collier Macmillan Publishers, c1989.
American Political Leaders: From Colonial Times to the Present, by Steven G. O'Brien; editor, Paula McGuire; consulting editors, James M. McPherson, Gary Gerstle. Santa Barbara, Calif.: ABC-CLIO, c1991. ISBN978-0874365702.
Why the Confederacy Lost, edited by Gabor S. Boritt; essays by James M. McPherson et al. New York: Oxford University Press, 1992.
Gettysburg: The Paintings of Mort Künstler, text by James M. McPherson. Atlanta, GA: Turner Publishing, c1993.
The Atlas of the Civil War, edited by James M. McPherson. New York: Macmillan, c1994.
The American Heritage New History of the Civil War, narrated by Bruce Catton; edited and with a new introduction by James McPherson. New York: Viking, 1996. ISBN978-0670781454.
Personal Memoirs of U.S. Grant, by Ulysses S. Grant; with an introduction and notes by James M. McPherson. New York: Penguin Books, 1999. ISBN978-0140437010.
Encyclopedia of Civil War Biographies, edited by James M. McPherson. 3 vols. Armonk, NY: Sharpe Reference, c2000. ISBN978-0765680211.
To the Best of My Ability: The American Presidents, edited by James M. McPherson and David Rubel. London: Dorling Kindersley, c2000, ISBN978-0789450739.
Reprinted in What Ifs? of American History: Eminent Historians Imagine What Might Have Been, Robert Cowley, ed. G. P. Putnam's Sons, 2003.
"A. Lincoln, Commander in Chief", in Foner, Eric, ed. Our Lincoln: New Perspectives on Lincoln and His World. W. W. Norton & Co., 2008. ISBN978-0-393-06756-9
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