Jeremy Gunawardena

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Jeremy Gunawardena
BornNovember 1955 (age 69)
Alma mater University of Cambridge (Ph.D.)
Known for Little b
linear framework [1]
Scientific career
Fields Systems biology, Mathematical biology, Algebraic topology
Institutions Harvard

Jeremy Gunawardena (born November 1955 [2] ) is a mathematician and systems biologist [3] who is Associate Professor in the Department of Systems Biology at Harvard Medical School. [4] His lab focuses on cellular information processing. [5]

Contents

Education

He received a BSc degree in mathematics from Imperial College, London, where he was awarded the Sir John Lubbock Memorial Prize for the highest-ranked first class degree in the University of London. [6] He did Part III of the Mathematical Tripos at Trinity College, Cambridge, for which he was awarded a J T Knight Prize in Class 1, and went on to do his PhD in algebraic topology with Frank Adams at Cambridge. [7]

Career

He was elected to a research fellowship in Pure Mathematics at Trinity College. [8] [9] Before taking up his Fellowship, he spent two years as L.E. Dickson Instructor in the Department of Mathematics at the University of Chicago. [10] He subsequently spent several years in industrial research at HP Labs in Bristol, UK. [11] [12] He also served as a Member of Council of the UK's Engineering and Physical Sciences Research Council (EPSRC). [13] In 2002, Gunawardena become a Visiting Scientist at the Bauer Center for Genomics Research at Harvard. [14] In 2003, he joined the newly formed Department of Systems Biology at Harvard Medical School. [15]

Work

Gunawardena's PhD thesis led to the solution, with Frank Adams and Haynes Miller, of the Segal conjecture for elementary abelian groups, [16] which provided the algebraic starting point for Gunnar Carlsson's solution of the full conjecture. [17] At the University of Chicago, he helped to set up the first computer science courses at the University. [18] At HP Labs, Gunawardena created the Basic Research Institute in the Mathematical Sciences (BRIMS), a pioneering academic-industrial partnership with the University of Bristol and the Isaac Newton Institute for Mathematical Sciences in Cambridge. [19] [20]

One of his most cited papers, "Multisite protein phosphorylation makes a good threshold but can be a poor switch" in Proceedings of the National Academy of Sciences, [21] has received 280 citations according to Google Scholar. [22]

Gunawardena introduced, with Aneil Mallavarapu, the programming-with-models approach to virtual cells, which led to the programming language little b. [23] Together with Marc Kirschner, Lew Cantley, Walter Fontana and Johan Paulsson, he helped set up and co-taught Systems Biology 200, one of the first courses to discuss the core mathematical ideas needed in systems biology. [24] He also founded the weekly series of Theory Lunch chalk talks, which has been running since 2003 and has brought some of the culture of the mathematical sciences into systems biology. [25]

At Harvard Medical School, Gunawardena's lab studies information processing in eukaryotic cells, with a focus on mechanisms like post-translational modification, gene regulation and allostery. [26] Gunawardena has had a long-standing interest in the interface between mathematics and biology, on which he has written several perspectives. [27] Gunawardena's essay, "Models in biology: 'accurate descriptions of our pathetic thinking'," published in BMC Biology, critiques the limitations of mathematical models in biological research. [28] He argues that many models fail to accurately represent nature and emphasizes the importance of verifiability and falsifiability in their components and conclusions. [29]

Gunawardena's lab has developed over several years a mathematical approach for analyzing biomolecular systems called the 'linear framework in which theorems can be proved about biological processes. [30]

Gunawardena has been exploring the concept of cellular learning, bringing ideas from cognitive science and psychology to bear on the behavior of individual cells. [31] He was awarded a European Research Council synergy grant to study this, 'CeLEARN: learning in single cells through dynamical internal representations', together with Aneta Koseska, Dietmar Schmucker and Jordi Garcia-Ojalvo. [32]

Selected publications

References

  1. ↑ Nam, Kee-Myoung; Gunawardena, Jeremy (3 November 2023). "The linear framework II: using graph theory to analyse the transient regime of Markov processes". Frontiers in Cell and Developmental Biology. 11. doi: 10.3389/fcell.2023.1233808 . PMC   10656611 . PMID   38020901.
  2. ↑ "Jeremy GUNWARDENA pe". Companies House . Retrieved 2025-09-11.
  3. ↑ "Jeremy Gunawardena – Learning and cognition in single biological cells (2 June 2022)". Trinity Japan. 24 January 2022.
  4. ↑ Leigh, Doug; Watkins, Ryan; Gunawardena, Jeremy (17 March 2020). "The Minds of Single-celled Organisms – Jeremy Gunawardena". Parsing Science. doi:10.6084/m9.figshare.12006792.
  5. ↑ "Jeremy Gunawardena gave an online talk titled "Following the energy in cellular information processing" at the IBS Biomedical Mathematics Colloquium". Biomedical Mathematics Group. 18 November 2021.
  6. ↑ Cameron, David. "Biology Enters The Matrix Through New Computer Language". Lab Manager.
  7. ↑ "Jeremy Harin Charles Gunawardena". Mathematics Genealogy Project. Retrieved January 17, 2022.
  8. ↑ "CDS Lecture Series". isr.umd.edu. Retrieved January 17, 2022.
  9. ↑ "Crick Lecture | Jeremy Gunawardena". Crick. 9 July 2024.
  10. ↑ "Jeremy Gunawardena". Biomedical Mathematics Group. Retrieved 2024-07-27.
  11. ↑ "A non-equilibrium view of cellular information processing | BioQuant". www.bioquant.uni-heidelberg.de.
  12. ↑ "Invited seminar at BRIMS, Hewlett-Packard Laboratories". University of Portsmouth.
  13. ↑ "Systems Biology Seminar". UT Southwestern Events Calendar.
  14. ↑ "Biology, Biology and Physics, Biotechnology, and Biotech Management". Nature. 414 (6866): 4. December 2001. doi:10.1038/nj6866-04a.
  15. ↑ "Biology enters 'The Matrix' through new computer language". Phys Org.
  16. ↑ https://math.mit.edu/~hrm/papers/adams-gunawardena-miller-segal-conjecture.pdf THE SEGAL CONJECTURE FOR ELEMENTARY ABELIAN p-GROUPS J. F. ADAMS, J. H. GUNAWARDENA and H. MILLER
  17. ↑ Lück, Wolfgang (2020-04-23). "The Segal conjecture for infinite discrete groups". Algebraic & Geometric Topology. 20 (2): 965–986. arXiv: 1901.09250 . doi:10.2140/agt.2020.20.965. ISSN   1472-2739.
  18. ↑ "Talk of Prof. Jeremy Gunawardena | Event | Apr 30, 2019 | Institute for Systems Theory and Automatic Control | University of Stuttgart". www.ist.uni-stuttgart.de. Retrieved 2024-11-18.
  19. ↑ "Jeremy Gunawardena – Giovanni Armenise Harvard Foundation" . Retrieved 2024-11-18.
  20. ↑ "The art of numbers | plus.maths.org". plus.maths.org. 1999-05-01. Retrieved 2025-03-14.
  21. ↑ PNAS full text
  22. ↑ "Google Scholar".
  23. ↑ "Little b - Programming language". pldb.io. Retrieved 2024-11-18.
  24. ↑ "Jeremy Gunawardena | Systems, Synthetic, and Quantitative Biology". ssqbiophd.hms.harvard.edu. Retrieved 2024-11-18.
  25. ↑ "Theory Lunch 2024-25, Department of Systems Biology, Harvard Medical School". vcp.med.harvard.edu. Retrieved 2025-03-14.
  26. ↑ Tyson, John J.; Novák, Béla (2015-07-01). "Models in biology: lessons from modeling regulation of the eukaryotic cell cycle". BMC Biology. 13 (1): 46. doi: 10.1186/s12915-015-0158-9 . ISSN   1741-7007. PMC   4486427 . PMID   26129844.
  27. ↑ Gunawardena, Jeremy (2013-06-15). "Biology is more theoretical than physics". Molecular Biology of the Cell. 24 (12): 1827–1829. doi:10.1091/mbc.E12-03-0227. ISSN   1059-1524. PMC   3681688 .
  28. ↑ "Models in biology: 'accurate descr ..." archive.connect.h1.co. Retrieved 2025-01-23.
  29. ↑ Woolston, Chris (2014). "Maths reality check resonates online". Nature. 509 (7500): 263. doi:10.1038/509263e. ISSN   1476-4687.
  30. ↑ Nam, Kee-Myoung; Martinez-Corral, Rosa; Gunawardena, Jeremy (2022-06-10). "The linear framework: using graph theory to reveal the algebra and thermodynamics of biomolecular systems". Interface Focus. 12 (4) 20220013. doi:10.1098/rsfs.2022.0013. PMC   9184966 . PMID   35860006.
  31. ↑ "Cells that learn: ERC Synergy Grant fuels revolutionary..." Max Planck Institute for Neurobiology of Behavior. Retrieved 2024-12-13.
  32. ↑ "Dynamical Systems Biology lab". Dynamical Systems Biology lab. Retrieved 2024-12-13.