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Lifemapper is building a species diversity map of the world. It is similar to the SETI@Home client, in that it uses a volunteer computing client running primarily on home user's computers to correlate georeferenced biological samples with environmental models of the Earth. It is an experimental GIS, or Geographic Information System, that uses a special genetic algorithm to see if predicted rules about where a species lives match up with the species' observed natural settings. It is hoped that this technique will be able to both represent a current "map" of all organisms habitats on Earth as well as predict where organisms may possibly thrive or face extinction due to climate change and other ecological transformations.
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Bioaccumulation is the gradual accumulation of substances, such as pesticides or other chemicals, in an organism. Bioaccumulation occurs when an organism absorbs a substance at a rate faster than that at which the substance is lost or eliminated by catabolism and excretion. Thus, the longer the biological half-life of a toxic substance, the greater the risk of chronic poisoning, even if environmental levels of the toxin are not very high. Bioaccumulation, for example in fish, can be predicted by models. Hypothesis for molecular size cutoff criteria for use as bioaccumulation potential indicators are not supported by data. Biotransformation can strongly modify bioaccumulation of chemicals in an organism.
Environmental science is an interdisciplinary academic field that integrates physics, biology, and geography to the study of the environment, and the solution of environmental problems. Environmental science emerged from the fields of natural history and medicine during the Enlightenment. Today it provides an integrated, quantitative, and interdisciplinary approach to the study of environmental systems.
Biogeography is the study of the distribution of species and ecosystems in geographic space and through geological time. Organisms and biological communities often vary in a regular fashion along geographic gradients of latitude, elevation, isolation and habitat area. Phytogeography is the branch of biogeography that studies the distribution of plants. Zoogeography is the branch that studies distribution of animals. Mycogeography is the branch that studies distribution of fungi, such as mushrooms.
This glossary of ecology is a list of definitions of terms and concepts in ecology and related fields. For more specific definitions from other glossaries related to ecology, see Glossary of biology, Glossary of evolutionary biology, and Glossary of environmental science.
Folding@home is a volunteer computing project aimed to help scientists develop new therapeutics for a variety of diseases by the means of simulating protein dynamics. This includes the process of protein folding and the movements of proteins, and is reliant on simulations run on volunteers' personal computers. Folding@home is currently based at the University of Pennsylvania and led by Greg Bowman, a former student of Vijay Pande.
Americans For Medical Advancement (AFMA) is a not-for-profit, science-based, patient advocacy organization dedicated to improving healthcare through biomedical research. It was founded by Ray Greek, MD and his wife, Jean Greek, DVM.
Orbit@home was a BOINC-based volunteer computing project of the Planetary Science Institute. It uses the "Orbit Reconstruction, Simulation and Analysis" framework to optimize the search strategies that are used to find near-Earth objects.
Rosetta@home is a volunteer computing project researching protein structure prediction on the Berkeley Open Infrastructure for Network Computing (BOINC) platform, run by the Baker laboratory at the University of Washington. Rosetta@home aims to predict protein–protein docking and design new proteins with the help of about fifty-five thousand active volunteered computers processing at over 487,946 GigaFLOPS on average as of September 19, 2020. Foldit, a Rosetta@home videogame, aims to reach these goals with a crowdsourcing approach. Though much of the project is oriented toward basic research to improve the accuracy and robustness of proteomics methods, Rosetta@home also does applied research on malaria, Alzheimer's disease, and other pathologies.
Similarity Matrix of Proteins (SIMAP) is a database of protein similarities created using volunteer computing. It is freely accessible for scientific purposes. SIMAP uses the FASTA algorithm to precalculate protein similarity, while another application uses hidden Markov models to search for protein domains. SIMAP is a joint project of the Technical University of Munich, the Helmholtz Zentrum München, and the University of Vienna.
evolution@home was a volunteer computing project for evolutionary biology, launched in 2001. The aim of Evolution@Home is to improve understanding of evolutionary processes. This is achieved by simulating individual-based models. The Simulator005 module of evolution@home was designed to better predict the behaviour of Muller's ratchet.
Species distribution —or speciesdispersion — is the manner in which a biological taxon is spatially arranged. The geographic limits of a particular taxon's distribution is its range, often represented as shaded areas on a map. Patterns of distribution change depending on the scale at which they are viewed, from the arrangement of individuals within a small family unit, to patterns within a population, or the distribution of the entire species as a whole (range). Species distribution is not to be confused with dispersal, which is the movement of individuals away from their region of origin or from a population center of high density.
The following outline is provided as an overview of and topical guide to ecology:
Volunteer computing is a type of distributed computing in which people donate their computers' unused resources to a research-oriented project, and sometimes in exchange for credit points. The fundamental idea behind it is that a modern desktop computer is sufficiently powerful to perform billions of operations a second, but for most users only between 10-15% of its capacity is used. Typical uses like basic word processing or web browsing leave the computer mostly idle.
Ecological forecasting uses knowledge of physics, ecology and physiology to predict how ecological populations, communities, or ecosystems will change in the future in response to environmental factors such as climate change. The goal of the approach is to provide natural resource managers with information to anticipate and respond to short and long-term climate conditions.
The Environmental Molecular Sciences Laboratory is a Department of Energy, Office of Science facility at Pacific Northwest National Laboratory in Richland, Washington, United States.
Geographic Information Systems (GIS) has become an integral part of aquatic science and limnology. Water by its very nature is dynamic. Features associated with water are thus ever-changing. To be able to keep up with these changes, technological advancements have given scientists methods to enhance all aspects of scientific investigation, from satellite tracking of wildlife to computer mapping of habitats. Agencies like the US Geological Survey, US Fish and Wildlife Service as well as other federal and state agencies are utilizing GIS to aid in their conservation efforts.
Species distribution modelling (SDM), also known as environmental(or ecological) niche modelling (ENM), habitat modelling, predictive habitat distribution modelling, and range mapping uses computer algorithms to predict the distribution of a species across geographic space and time using environmental data. The environmental data are most often climate data, but can include other variables such as soil type, water depth, and land cover. SDMs are used in several research areas in conservation biology, ecology and evolution. These models can be used to understand how environmental conditions influence the occurrence or abundance of a species, and for predictive purposes. Predictions from an SDM may be of a species’ future distribution under climate change, a species’ past distribution in order to assess evolutionary relationships, or the potential future distribution of an invasive species. Predictions of current and/or future habitat suitability can be useful for management applications.
AquaMaps is a collaborative project with the aim of producing computer-generated predicted global distribution maps for marine species on a 0.5 x 0.5 degree grid of the oceans based on data available through online species databases such as FishBase and SeaLifeBase and species occurrence records from OBIS or GBIF and using an environmental envelope model in conjunction with expert input. The underlying model represents a modified version of the relative environmental suitability (RES) model developed by Kristin Kaschner to generate global predictions of marine mammal occurrences.
The following outline is provided as an overview of and topical guide to natural science:
Pedometric mapping, or statistical soil mapping, is data-driven generation of soil property and class maps that is based on use of statistical methods. Its main objectives are to predict values of some soil variable at unobserved locations, and to access the uncertainty of that estimate using statistical inference i.e. statistically optimal approaches. From the application point of view, its main objective is to accurately predict response of a soil-plant ecosystem to various soil management strategies—that is, to generate maps of soil properties and soil classes that can be used for other environmental models and decision-making. It is largely based on applying geostatistics in soil science, and other statistical methods used in pedometrics.