In computer science and information theory, a Huffman code is a particular type of optimal prefix code that is commonly used for lossless data compression. The process of finding or using such a code is Huffman coding, an algorithm developed by David A. Huffman while he was a Sc.D. student at MIT, and published in the 1952 paper "A Method for the Construction of Minimum-Redundancy Codes".
In computer science, a trie, also called digital tree or prefix tree, is a type of k-ary search tree, a tree data structure used for locating specific keys from within a set. These keys are most often strings, with links between nodes defined not by the entire key, but by individual characters. In order to access a key, the trie is traversed depth-first, following the links between nodes, which represent each character in the key.
In computer science, the Boyer–Moore string-search algorithm is an efficient string-searching algorithm that is the standard benchmark for practical string-search literature. It was developed by Robert S. Boyer and J Strother Moore in 1977. The original paper contained static tables for computing the pattern shifts without an explanation of how to produce them. The algorithm for producing the tables was published in a follow-on paper; this paper contained errors which were later corrected by Wojciech Rytter in 1980.
In computer science, a suffix tree is a compressed trie containing all the suffixes of the given text as their keys and positions in the text as their values. Suffix trees allow particularly fast implementations of many important string operations.
In computer science, a suffix array is a sorted array of all suffixes of a string. It is a data structure used in, among others, full-text indices, data-compression algorithms, and the field of bibliometrics.
A B+ tree is an m-ary tree with a variable but often large number of children per node. A B+ tree consists of a root, internal nodes and leaves. The root may be either a leaf or a node with two or more children.
In computer science, a longest common substring of two or more strings is a longest string that is a substring of all of them. There may be more than one longest common substring. Applications include data deduplication and plagiarism detection.
In formal language theory and computer science, a substring is a contiguous sequence of characters within a string. For instance, "the best of" is a substring of "It was the best of times". In contrast, "Itwastimes" is a subsequence of "It was the best of times", but not a substring.
In computer science, a generalized suffix tree is a suffix tree for a set of strings. Given the set of strings of total length , it is a Patricia tree containing all suffixes of the strings. It is mostly used in bioinformatics.
In computational phylogenetics, tree alignment is a computational problem concerned with producing multiple sequence alignments, or alignments of three or more sequences of DNA, RNA, or protein. Sequences are arranged into a phylogenetic tree, modeling the evolutionary relationships between species or taxa. The edit distances between sequences are calculated for each of the tree's internal vertices, such that the sum of all edit distances within the tree is minimized. Tree alignment can be accomplished using one of several algorithms with various trade-offs between manageable tree size and computational effort.
In graph theory and computer science, the lowest common ancestor (LCA) of two nodes v and w in a tree or directed acyclic graph (DAG) T is the lowest node that has both v and w as descendants, where we define each node to be a descendant of itself.
In computer science, a Cartesian tree is a binary tree derived from a sequence of distinct numbers. To construct the Cartesian tree, set its root to be the minimum number in the sequence, and recursively construct its left and right subtrees from the subsequences before and after this number. It is uniquely defined as a min-heap whose symmetric (in-order) traversal returns the original sequence.
In computer science, a range minimum query (RMQ) solves the problem of finding the minimal value in a sub-array of an array of comparable objects. Range minimum queries have several use cases in computer science, such as the lowest common ancestor problem and the longest common prefix problem (LCP).
In computer science, the longest palindromic substring or longest symmetric factor problem is the problem of finding a maximum-length contiguous substring of a given string that is also a palindrome. For example, the longest palindromic substring of "bananas" is "anana". The longest palindromic substring is not guaranteed to be unique; for example, in the string "abracadabra", there is no palindromic substring with length greater than three, but there are two palindromic substrings with length three, namely, "aca" and "ada". In some applications it may be necessary to return all maximal palindromic substrings rather than returning only one substring or returning the maximum length of a palindromic substring.
In computer science, the longest common prefix array is an auxiliary data structure to the suffix array. It stores the lengths of the longest common prefixes (LCPs) between all pairs of consecutive suffixes in a sorted suffix array.
An anatree is a data structure designed to solve anagrams. Solving an anagram is the problem of finding a word from a given list of letters. These problems are commonly encountered in word games like Scrabble or in newspaper crossword puzzles. The problem for the wordwheel also has the condition that the central letter appear in all the words framed with the given set. Some other conditions may be introduced regarding the frequency of each of the letters in the given input string. These problems are classified as Constraint satisfaction problem in computer science literature.
In the field of computational biology, a planted motif search (PMS) also known as a (l, d)-motif search (LDMS) is a method for identifying conserved motifs within a set of nucleic acid or peptide sequences.
In computer science, frequent subtree mining is the problem of finding all patterns in a given database whose support is over a given threshold. It is a more general form of the maximum agreement subtree problem.
In computer science, a suffix automaton is an efficient data structure for representing the substring index of a given string which allows the storage, processing, and retrieval of compressed information about all its substrings. The suffix automaton of a string is the smallest directed acyclic graph with a dedicated initial vertex and a set of "final" vertices, such that paths from the initial vertex to final vertices represent the suffixes of the string.
In computer science a palindrome tree, also called an EerTree, is a type of search tree, that allows for fast access to all palindromes contained in a string. They can be used to solve the longest palindromic substring, the k-factorization problem, palindromic length of a string, and finding and counting all distinct sub-palindromes. Palindrome trees do this in an online manner, that is it does not require the entire string at the start and can be added to character by character.
