Kruskal's algorithm finds a minimum spanning forest of an undirected edge-weighted graph. If the graph is connected, it finds a minimum spanning tree. It is a greedy algorithm that in each step adds to the forest the lowest-weight edge that will not form a cycle. The key steps of the algorithm are sorting and the use of a disjoint-set data structure to detect cycles. Its running time is dominated by the time to sort all of the graph edges by their weight.
In computer science, Prim's algorithm is a greedy algorithm that finds a minimum spanning tree for a weighted undirected graph. This means it finds a subset of the edges that forms a tree that includes every vertex, where the total weight of all the edges in the tree is minimized. The algorithm operates by building this tree one vertex at a time, from an arbitrary starting vertex, at each step adding the cheapest possible connection from the tree to another vertex.
In mathematics, particularly graph theory, and computer science, a directed acyclic graph (DAG) is a directed graph with no directed cycles. That is, it consists of vertices and edges, with each edge directed from one vertex to another, such that following those directions will never form a closed loop. A directed graph is a DAG if and only if it can be topologically ordered, by arranging the vertices as a linear ordering that is consistent with all edge directions. DAGs have numerous scientific and computational applications, ranging from biology to information science to computation (scheduling).
In computer science, a graph is an abstract data type that is meant to implement the undirected graph and directed graph concepts from the field of graph theory within mathematics.
In the mathematical theory of directed graphs, a graph is said to be strongly connected if every vertex is reachable from every other vertex. The strongly connected components of a directed graph form a partition into subgraphs that are themselves strongly connected. It is possible to test the strong connectivity of a graph, or to find its strongly connected components, in linear time (that is, Θ(V + E )).
Force-directed graph drawing algorithms are a class of algorithms for drawing graphs in an aesthetically-pleasing way. Their purpose is to position the nodes of a graph in two-dimensional or three-dimensional space so that all the edges are of more or less equal length and there are as few crossing edges as possible, by assigning forces among the set of edges and the set of nodes, based on their relative positions, and then using these forces either to simulate the motion of the edges and nodes or to minimize their energy.
In computer science, a topological sort or topological ordering of a directed graph is a linear ordering of its vertices such that for every directed edge (u,v) from vertex u to vertex v, u comes before v in the ordering. For instance, the vertices of the graph may represent tasks to be performed, and the edges may represent constraints that one task must be performed before another; in this application, a topological ordering is just a valid sequence for the tasks. Precisely, a topological sort is a graph traversal in which each node v is visited only after all its dependencies are visited. A topological ordering is possible if and only if the graph has no directed cycles, that is, if it is a directed acyclic graph (DAG). Any DAG has at least one topological ordering, and algorithms are known for constructing a topological ordering of any DAG in linear time. Topological sorting has many applications, especially in ranking problems such as feedback arc set. Topological sorting is possible even when the DAG has disconnected components.
In numerical linear algebra, the Cuthill–McKee algorithm (CM), named after Elizabeth Cuthill and James McKee, is an algorithm to permute a sparse matrix that has a symmetric sparsity pattern into a band matrix form with a small bandwidth. The reverse Cuthill–McKee algorithm (RCM) due to Alan George and Joseph Liu is the same algorithm but with the resulting index numbers reversed. In practice this generally results in less fill-in than the CM ordering when Gaussian elimination is applied.
In the mathematical subfield of graph theory a level structure of a rooted graph is a partition of the vertices into subsets that have the same distance from a given root vertex.
In graph theory, a path decomposition of a graph G is, informally, a representation of G as a "thickened" path graph, and the pathwidth of G is a number that measures how much the path was thickened to form G. More formally, a path-decomposition is a sequence of subsets of vertices of G such that the endpoints of each edge appear in one of the subsets and such that each vertex appears in a contiguous subsequence of the subsets, and the pathwidth is one less than the size of the largest set in such a decomposition. Pathwidth is also known as interval thickness, vertex separation number, or node searching number.
In computer science, the Hopcroft–Karp algorithm is an algorithm that takes a bipartite graph as input and produces a maximum-cardinality matching as output — a set of as many edges as possible with the property that no two edges share an endpoint. It runs in time in the worst case, where is set of edges in the graph, is set of vertices of the graph, and it is assumed that . In the case of dense graphs the time bound becomes , and for sparse random graphs it runs in time with high probability.
In computer science, graph traversal refers to the process of visiting each vertex in a graph. Such traversals are classified by the order in which the vertices are visited. Tree traversal is a special case of graph traversal.
Trilinos is a collection of open-source software libraries, called packages, intended to be used as building blocks for the development of scientific applications. The word "Trilinos" is Greek and conveys the idea of "a string of pearls", suggesting a number of software packages linked together by a common infrastructure. Trilinos was developed at Sandia National Laboratories from a core group of existing algorithms and utilizes the functionality of software interfaces such as BLAS, LAPACK, and MPI. In 2004, Trilinos received an R&D100 Award.
In mathematics, a graph partition is the reduction of a graph to a smaller graph by partitioning its set of nodes into mutually exclusive groups. Edges of the original graph that cross between the groups will produce edges in the partitioned graph. If the number of resulting edges is small compared to the original graph, then the partitioned graph may be better suited for analysis and problem-solving than the original. Finding a partition that simplifies graph analysis is a hard problem, but one that has applications to scientific computing, VLSI circuit design, and task scheduling in multiprocessor computers, among others. Recently, the graph partition problem has gained importance due to its application for clustering and detection of cliques in social, pathological and biological networks. For a survey on recent trends in computational methods and applications see Buluc et al. (2013). Two common examples of graph partitioning are minimum cut and maximum cut problems.
In graph theory, the planar separator theorem is a form of isoperimetric inequality for planar graphs, that states that any planar graph can be split into smaller pieces by removing a small number of vertices. Specifically, the removal of vertices from an n-vertex graph can partition the graph into disjoint subgraphs each of which has at most vertices.
In computer science, lexicographic breadth-first search or Lex-BFS is a linear time algorithm for ordering the vertices of a graph. The algorithm is different from a breadth-first search, but it produces an ordering that is consistent with breadth-first search.
In graph theory, a k-degenerate graph is an undirected graph in which every subgraph has a vertex of degree at most k: that is, some vertex in the subgraph touches k or fewer of the subgraph's edges. The degeneracy of a graph is the smallest value of k for which it is k-degenerate. The degeneracy of a graph is a measure of how sparse it is, and is within a constant factor of other sparsity measures such as the arboricity of a graph.
In numerical analysis, nested dissection is a divide and conquer heuristic for the solution of sparse symmetric systems of linear equations based on graph partitioning. Nested dissection was introduced by George (1973); the name was suggested by Garrett Birkhoff.
In computer science, the method of contraction hierarchies is a speed-up technique for finding the shortest-path in a graph. The most intuitive applications are car-navigation systems: a user wants to drive from to using the quickest possible route. The metric optimized here is the travel time. Intersections are represented by vertices, the road sections connecting them by edges. The edge weights represent the time it takes to drive along this segment of the road. A path from to is a sequence of edges ; the shortest path is the one with the minimal sum of edge weights among all possible paths. The shortest path in a graph can be computed using Dijkstra's algorithm but, given that road networks consist of tens of millions of vertices, this is impractical. Contraction hierarchies is a speed-up method optimized to exploit properties of graphs representing road networks. The speed-up is achieved by creating shortcuts in a preprocessing phase which are then used during a shortest-path query to skip over "unimportant" vertices. This is based on the observation that road networks are highly hierarchical. Some intersections, for example highway junctions, are "more important" and higher up in the hierarchy than for example a junction leading into a dead end. Shortcuts can be used to save the precomputed distance between two important junctions such that the algorithm doesn't have to consider the full path between these junctions at query time. Contraction hierarchies do not know about which roads humans consider "important", but they are provided with the graph as input and are able to assign importance to vertices using heuristics.
In the design of algorithms, partition refinement is a technique for representing a partition of a set as a data structure that allows the partition to be refined by splitting its sets into a larger number of smaller sets. In that sense it is dual to the union-find data structure, which also maintains a partition into disjoint sets but in which the operations merge pairs of sets. In some applications of partition refinement, such as lexicographic breadth-first search, the data structure maintains as well an ordering on the sets in the partition.
