The Semantic Web, sometimes known as Web 3.0, is an extension of the World Wide Web through standards set by the World Wide Web Consortium (W3C). The goal of the Semantic Web is to make Internet data machine-readable.
In information science, an ontology encompasses a representation, formal naming, and definitions of the categories, properties, and relations between the concepts, data, or entities that pertain to one, many, or all domains of discourse. More simply, an ontology is a way of showing the properties of a subject area and how they are related, by defining a set of terms and relational expressions that represent the entities in that subject area. The field which studies ontologies so conceived is sometimes referred to as applied ontology.
A DNA sequencer is a scientific instrument used to automate the DNA sequencing process. Given a sample of DNA, a DNA sequencer is used to determine the order of the four bases: G (guanine), C (cytosine), A (adenine) and T (thymine). This is then reported as a text string, called a read. Some DNA sequencers can be also considered optical instruments as they analyze light signals originating from fluorochromes attached to nucleotides.
F. Hoffmann-La Roche AG, commonly known as Roche, is a Swiss multinational holding healthcare company that operates worldwide under two divisions: Pharmaceuticals and Diagnostics. Its holding company, Roche Holding AG, has shares listed on the SIX Swiss Exchange. The company headquarters are located in Basel. Roche is the fifth-largest pharmaceutical company in the world by revenue and the leading provider of cancer treatments globally. In 2023, the company’s seat in Forbes Global 2000 was 76.
Semantic MediaWiki (SMW) is an extension to MediaWiki that allows for annotating semantic data within wiki pages, thus turning a wiki that incorporates the extension into a semantic wiki. Data that has been encoded can be used in semantic searches, used for aggregation of pages, displayed in formats like maps, calendars and graphs, and exported to the outside world via formats like RDF and CSV.
EXALEAD is a software company, created in 2000, that provided search platforms and search-based applications (SBA) for consumer and business users. The company was headquartered in Paris, France, and was a subsidiary of Dassault Systèmes.
Thermo Fisher Scientific Inc. is an American-headquartered life science and clinical research company. It is a global supplier of analytical instruments, clinical development solutions, specialty diagnostics, laboratory, pharmaceutical and biotechnology services. Based in Waltham, Massachusetts, Thermo Fisher was formed through the merger of Thermo Electron and Fisher Scientific in 2006. Thermo Fisher Scientific has acquired other reagent, consumable, instrumentation, and service providers, including Life Technologies Corporation (2013), Alfa Aesar (2015), Affymetrix (2016), FEI Company (2016), BD Advanced Bioprocessing (2018), and PPD (2021).
In computer science, the semantic desktop is a collective term for ideas related to changing a computer's user interface and data handling capabilities so that data are more easily shared between different applications or tasks and so that data that once could not be automatically processed by a computer could be. It also encompasses some ideas about being able to share information automatically between different people. This concept is very much related to the Semantic Web, but is distinct insofar as its main concern is the personal use of information.
Mostafa Ronaghi is an Iranian molecular biologist, specializing in DNA sequencing methodology. He earned his Ph.D. from the Royal Institute of Technology in Sweden in 1998.
NEPOMUK is an open-source software specification that is concerned with the development of a social semantic desktop that enriches and interconnects data from different desktop applications using semantic metadata stored as RDF. Between 2006 and 2008 it was funded by a European Union research project of the same name that grouped together industrial and academic actors to develop various Semantic Desktop technologies.
Convera was formed in December 2000 by the merger of Intel's Interactive Services division and Excalibur Technologies Corporation. Until 2007, Convera's primary focus was the enterprise search market through its flagship product, RetrievalWare, which is widely used within the secure government sector in the United States, UK, Canada and a number of other countries. Convera sold its enterprise search business to FAST Search & Transfer in August 2007 for $23 million, at which point RetrievalWare was officially retired. Microsoft Corporation continues to maintain RetrievalWare for its existing customer base.
Amit Sheth is a computer scientist at University of South Carolina in Columbia, South Carolina. He is the founding Director of the Artificial Intelligence Institute, and a Professor of Computer Science and Engineering. From 2007 to June 2019, he was the Lexis Nexis Ohio Eminent Scholar, director of the Ohio Center of Excellence in Knowledge-enabled Computing, and a Professor of Computer Science at Wright State University. Sheth's work has been cited by over 48,800 publications. He has an h-index of 117, which puts him among the top 100 computer scientists with the highest h-index. Prior to founding the Kno.e.sis Center, he served as the director of the Large Scale Distributed Information Systems Lab at the University of Georgia in Athens, Georgia.
Biovista Inc. is a private drug development services company based in Charlottesville, Virginia, US. Biovista's core business activities include drug repositioning and drug de-risking as well as disease cohort analysis, adverse event prediction and clinical hold analysis services. Biovista is also applying its technology platform to develop its own drug repositioning programs in the areas of central nervous system (CNS), diabetes/obesity, eye disorders, and oncology.
Natural-language user interface is a type of computer human interface where linguistic phenomena such as verbs, phrases and clauses act as UI controls for creating, selecting and modifying data in software applications.
BORO is an approach to developing ontological or semantic models for large complex operational applications that consists of a top ontology as well as a process for constructing the ontology. It was originally developed as a method for mining ontologies from multiple legacy systems – as the first stage in an architectural transformation or software modernization. It has also been used to enable semantic interoperability between legacy systems. It is described in detail in. It is the analysis method used in the development and maintenance of the U.S. Department of Defense Architecture Framework (DoDAF) Meta Model (DM2), where a data modeling working group of over 350 members was able to systematically resolve a broad spectrum of knowledge representation issues.
Model Driven Interoperability (MDI) is a methodological framework, which provides a conceptual and technical support to make interoperable enterprises using ontologies and semantic annotations, following model driven development (MDD) principles.
The German software company fluid Operations AG (fluidOps) was founded in 2008, and specializes in cloud management and semantic technology. Fluid Operations' product portfolio includes the semantic integration platform Information Workbench and eCloudManager. Additionally, fluid Operations offers an open source software, the VMFS Driver. In 2018, fluidOps joined Veritas Technologies to empower organizations to discover the Truth in Information.
The Open Semantic Framework (OSF) is an integrated software stack using semantic technologies for knowledge management. It has a layered architecture that combines existing open source software with additional open source components developed specifically to provide a complete Web application framework. OSF is made available under the Apache 2 license.
The INTEROP V-Lab is a network of organizations, which links scientists, research centers, representatives of industry, and small and medium-sized enterprises. The members come from several European countries as well as China and represent 250 scientists and 70 organizations.
Discngine is a french life science software and service company, dedicated to providing IT solutions for drug discovery. The company was founded in 2004 and is based in Paris, France.
