Polynucleobacter-1 RNA motif

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Polynucleobacter-1 RNA
Polynucleobacter-1-RNA.svg
Consensus secondary structure of Polynucleobacter-1 RNAs
Identifiers
SymbolPolynucleobacter-1
Rfam RF01718
Other data
RNA typesRNA
Domain(s) Marine metagenome
PDB structures PDBe

The Polynucleobacter-1 RNA motif is a conserved RNA structure that was identified by bioinformatics. [1] The RNA structure is predominantly located in genome sequences derived from DNA extracted from uncultivated marine samples. However it was also predicted in the genome of Polynucleobacter species QLW-P1DMWA-1, a kind of betaproteobacteria. The RNAs are often located near to a conserved gene that might be homologous to a gene found in a phage that infects cyanobacteria. However, it is unknown if the RNA is used by phages.

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rne-II RNA motif

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<span class="mw-page-title-main">SbcD RNA motif</span>

The sbcD RNA motif is a conserved RNA structure identified using bioinformatics. sbc RNAs are found some species of bacteria classified under the family Burkholderiaceae, and usually reside in plasmids. They are always located in what might be the 5' untranslated regions of operons that include sbcD genes. sbcD genes are involved in DNA repair.

<span class="mw-page-title-main">Yfr2</span> Family of non-coding RNAs

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<span class="mw-page-title-main">RAGATH RNA motifs</span> Bioinformatics strategy

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<i>uup</i> RNA motif

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References

  1. Weinberg Z, Wang JX, Bogue J, et al. (March 2010). "Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea and their metagenomes". Genome Biol. 11 (3): R31. doi: 10.1186/gb-2010-11-3-r31 . PMC   2864571 . PMID   20230605.