SILVA ribosomal RNA database

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SILVA is a ribosomal RNA database [1] [2] [3] established in collaboration between the Microbial Genomics Group at the Max Planck Institute for Marine Microbiology in Bremen, Germany, the Department of Microbiology at the Technical University Munich, and Ribocon. [4] [5]

Contents

Release 117 of the database (January 2014) held more than 4,000,000 small subunit (SSU - 16S/18S) and 400,000 large subunit (LSU - 23S/28S) sequences. [6] [ failed verification ] Sequences are provided as files for the ARB software environment. [4]

See also

References

  1. ↑ Christian Quast, Elmar Pruesse, Pelin Yilmaz, Jan Gerken, Timmy Schweer, Pablo Yarza, Jörg Peplies, Frank Oliver Glöckner (2013). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research41 (D1): D590-D596. doi : 10.1093/nar/gks1219 [ independent source needed ]
  2. ↑ Pelin Yilmaz; Laura Wegener Parfrey; Pablo Yarza; Jan Gerken; Elmar Pruesse; Christian Quast; Timmy Schweer; Jörg Peplies; Wolfgang Ludwig; Frank Oliver Glöckner (2014). "The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks". Nucleic Acids Research. 42 (D1): D643 –D648. doi: 10.1093/nar/gkt1209 . PMC   3965112 . PMID   24293649.
  3. ↑ Elmar Pruesse, Christian Quast, Katrin Knittel, Bernhard M. Fuchs, Wolfgang Ludwig, Jörg Peplies, Frank Oliver Glöckner (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research35 (21): 7188-7196. doi : 10.1093/nar/gkm864 [ independent source needed ]
  4. 1 2 Silva. Ribocon GmbH. Accessed November 2016.
  5. ↑ Environmental Bioinformatics. Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology. Accessed November 2016.[ independent source needed ]
  6. ↑ Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner (2014). An Introduction to RNA Databases. Methods in Molecular Biology1097: 107–123. doi : 10.1007/978-1-62703-709-9_6.
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