Systrip

Last updated
Systrip
Systrip overview.png
Stable release
1.0 / 27 May 2011
Repository OOjs UI icon edit-ltr-progressive.svg
Operating system Windows, Linux
License LGPL, GPL
Website tulip.labri.fr/TulipDrupal/?q=systrip

Systrip is a visual environment for the analysis of time-series data in the context of biological networks. Systrip gathers bioinformatics and graph theoretical algorithms that can be assembled in different ways to help biologists in their visual mining process. It had been used to analyze various real biological data. [1]

Contents

Presentation

Systrip is developed in C++ and is based on Tulip, an information visualization framework dedicated to the analysis and visualization of relational data.

The Model-View-Controller architecture of Tulip allows Systrip to support multiple and synchronized views. Any interaction on a view (e.g. selection of an element) implies the automatic update of all views displaying this data. In addition to the algorithms and views developed specifically for Systrip, the Tulip plug-ins system allows Systrip users to access all its available plug-ins (plug-ins integrated in Tulip releases but also via Tulip plug-ins server).

Features

Input

Structure manipulation

Visualization

Analysis

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References

  1. Copeland, WB; Bartley, BA; Chandran, D; Galdzicki, M; Kim, KH; Sleight, SC; Maranas, CD; Sauro, HM (May 2012). "Computational tools for metabolic engineering". Metabolic Engineering. 14 (3): 270–80. doi:10.1016/j.ymben.2012.03.001. PMC   3361690 . PMID   22629572.