Topochemical polymerization is a polymerization method performed by monomers aligned in the crystal state. In this process, the monomers are crystallised and polymerised under external stimuli such as heat, light, or pressure. Compared to traditional polymerisation, the movement of monomers was confined by the crystal lattice in topochemical polymerisation, giving rise to polymers with high crystallinity, tacticity, and purity. [1] Topochemical polymerisation can also be used to synthesise unique polymers such as polydiacetylene [2] that are otherwise hard to prepare.
Various reactions have been adopted in the field of topochemical polymerisation, such as [2+2], [3] [4+2], [4] [4+4], [5] and [3+2] [6] cycloaddition, linear addition between dienes, trienes, diacetylenes. Other than linear polymers, they can also be applied to the synthesis of two dimensional covalent networks. [7]
The term "topochemistry" was first introduced by Kohlschütter in 1919, referring to the chemical reactions driven by the molecular alignments within the crystal. [8] The prefix "topo" came from the Greek word "topos", which means "site". [9] These reactions quickly draw people's attention because of their high conversion as well as solvent/catalyst-free nature. However, the early studies were usually serendipitous.
In the 1960s, Schmidt's work on [2+2] photodimerization of cinnamic acids established the systematic approach to study the topochemical reactions. They proposed that only double bonds adopting coplanar and parallel orientation within a distance of 3.5-4.2 Å could react with each other in the crystal lattice. [10] This empirical rule was later referred to as Schmidt's criteria.
[2+2] cycle addition [3] and diacetylene polymerization [11] are among the early examples of topochemical polymerization. As shown in the figure, the formation of 1,3-diphenyl substituted cyclobutane derivatives was first studied in detail by Hasegawa and his coworkers in 1967. [12] A series of similar monomers had also been studied by them. In 1969, the 1,4-addition polymerization of diacetylene was confirmed by Wegner and his coworkers. [11] Restricted by the experimental condition, early researchers of topochemical polymerization usually characterized the reaction process and product with traditional chemical methods. The development of modern analysis technology such as single-crystal X-ray diffraction greatly facilitated the systematic study of topochemical polymerization and kept the popularity till these days.
In topochemical polymerization, little room is provided for the monomer to adjust their position. Thus, the reacting sites of the monomer should be pre-packed in a suitable manner. If [2+2] cycloaddition is involved in the polymerization, then the alignment of double bonds within the crystal should fulfill the aforementioned Schmidt's criteria. Sometimes multiple parameters should be considered. As shown in the figure, for example, the 1,4-polymerization of diacetylene requires the fine adjustment of angle as well as the monomer packing distance to achieve a satisfying reaction site distance dCC (distance between C1 and C4). [13]
The method invented by Schmidt is still the most promising way to investigate the structural criteria of polymerization. [10] In this approach, a series of monomers with different substituents are crystallized and characterized by single-crystal X-ray diffractometer. By comparing their polymerization reactivity and slightly different structure, the suitable range of lattice parameters can be derived. [14]
Though Schmidt's criteria are generally useful for predicting the topochemical reactivity, there are many instances of violation of these criteria. Many examples of smooth reaction of crystals that are not expected to be reactive based on Schmidt's criteria are reported. [15]
Various methods have been proposed to achieve the suitable alignment of monomers in the crystal. [1] These methods can be divided into two categories:
An obvious method is to introduce supramolecular interactions to the monomer. Popular choices include π - π stacking interactions, hydrogen/halogen bonding interactions, and Coulomb interactions. These interactions are sometimes inherent properties of reaction groups, such as π-π interaction between azide and acetylene group, or stacking force between biphenylethylene unit. Sometimes the side groups are introduced to form a network within the crystal.
The other strategy is to take advantage of the so-called "host-guest" assembly. In this case, the monomer is designed to link to a "host" molecule, while the host molecule is in charge of forming the ordered network. The host molecule stays intact during the polymerization. Such strategies simplify the synthesis of monomer. [16]
Although the movement of the mass center of the monomer is restricted by the crystal during the polymerization, the slight change of the bond length before and after the reaction give rise to the shifting of lattice parameters. Consider a real-life topochemical polymerization initiated by irradiation: if monomer beneath the surface polymerizes later due to the light absorption near the surface, the already polymerized layer will shrink or expand, causing unbalanced stress within the crystal. The crystal might break or even lose crystallinity if the stress isn't handled properly. [6]
Using elastic interaction such as weak hydrogen bonds is a common strategy to release the stress. It has been found that the bond length of the hydrogen bond in the crystal would change after polymerization, acting as cushion. [17] Another possible routine is to introduce "soft" parts (C-C or C-O bond free to rotate instead of rigid conjugated system) in the monomer molecule. But it will in turn increase the difficulty of crystallization. [18]
Light irradiation can initiate the reaction while avoiding exerting additional physical effects on the monomer crystal. It can be used in topochemical polymerization based on free radical mechanism such as 1,4-polymerization of diacetylene or diene polymerization. [1] UV light is widely used as initiation method as it does in conventional polymerization. In some circumstances, however, the polymerization initiated by UV light is so slow that unbalanced pressure will accumulate more easily as previously stated. γ-irradiation can trigger the reaction faster due to the shorter wavelength. Thus, it was proved to be a better choice than UV in various reactions such as topochemical polymerization of 1,3-diene carboxylic acid derivatives. [19]
Heat can be used to trigger the electrocyclization topochemical polymerization. For example, Kana M. Sureshan et al. have developed a series of bio-compatible polymer crystals based on [3+2] Topochemical Azide-Alkyne Cycloaddition (TAAC) reaction [20] [21] and [3+2] topochemical ene-azide cycloaddition (TEAC) reaction. [22] The monomers are polymerized by heating for a few days. Contrary to the light-initiated topochemical polymerization, the lower temperature and slower reaction rate would produce high quality polymer crystals. This is due to the fact that heat expansion is not obvious in lower temperature. [23]
Topochemical polymerization can also be triggered by pressure. It has been reported that the cocrystal of diododiacetylene (guest) and bispyridyl oxalamide (host) could be polymerized under pressure. [24] Interestingly, no polymerization was observed under light or heat due to the unfavorable distance between diacetylene units. The researcher postulated that the high pressure might "squeeze" the reactive site together and initiate the polymerization.
Tactic and stereoselective polymerizations are traditionally catalyzed by metal-organic complexes. Topochemical polymerization provides an additional choice. In addition, by changing the alignment of the monomer within the crystal, the tacticity/stereochemistry of the polymer product could be easily controlled. An intuitive example is shown in the figure. In topochemical polymerization of 1,3-diene carboxylic acid derivatives, polymers with four different configurations can be prepared. Their structural relationships with the monomer packing are also shown in the figure. [25]
Single crystal polymers have unique applications in various fields Compared to single crystals of small molecules. Because of the long chain and various conformation, it is hard for the polymers to be crystallized directly from solution. Few examples of polymer single crystals prepared in this way suffered from low quality and small size. [26] Topochemical polymerization provides a potential solution to yield high-quality polymer single crystals.
If the polymer is still mono crystalline, the transformation from single-crystal monomer to polymer is called single-crystal-to-single-crystal (SCSC) transformation, [14] which required a more sophisticated design than normal topochemical polymerization. In order to prevent the polymer from breaking into polycrystalline powder, the stress-releasing strategies should be carefully considered. However, the study on general criteria of SCSC transition is still in its infancy and requires further study.
In addition to organic polymers, coordination polymers can also be prepared with topochemical polymerization. The various conformations of metal-organic complexes provide large libraries of monomer geometry. [27] In addition, the length and angle of metal-ligand bonds are relatively flexible so that stress generated by polymerization is able to be released.
The Two-dimensional (2-D) polymers formed by topochemical polymerization are popular topics in material chemistry. By synthesizing and polymerizing monomers with functionality greater than 2, the 2-D networks instead of linear polymers can be obtained. [28] [4+4] and [4+2] involving anthracene units are popular choices for 2D-polymer synthesis. 2-D covalent networks with high crystallinity can be produced in this way in high conversion. [5] [29] Recently, schluter et al. synthesized a 2D polymer via 2+2 topochemical cycloaddition reaction.
In polymer chemistry, polymerization, or polymerisation, is a process of reacting monomer molecules together in a chemical reaction to form polymer chains or three-dimensional networks. There are many forms of polymerization and different systems exist to categorize them.
In organic chemistry, the Diels–Alder reaction is a chemical reaction between a conjugated diene and a substituted alkene, commonly termed the dienophile, to form a substituted cyclohexene derivative. It is the prototypical example of a pericyclic reaction with a concerted mechanism. More specifically, it is classified as a thermally-allowed [4+2] cycloaddition with Woodward–Hoffmann symbol [π4s + π2s]. It was first described by Otto Diels and Kurt Alder in 1928. For the discovery of this reaction, they were awarded the Nobel Prize in Chemistry in 1950. Through the simultaneous construction of two new carbon–carbon bonds, the Diels–Alder reaction provides a reliable way to form six-membered rings with good control over the regio- and stereochemical outcomes. Consequently, it has served as a powerful and widely applied tool for the introduction of chemical complexity in the synthesis of natural products and new materials. The underlying concept has also been applied to π-systems involving heteroatoms, such as carbonyls and imines, which furnish the corresponding heterocycles; this variant is known as the hetero-Diels–Alder reaction. The reaction has also been generalized to other ring sizes, although none of these generalizations have matched the formation of six-membered rings in terms of scope or versatility. Because of the negative values of ΔH° and ΔS° for a typical Diels–Alder reaction, the microscopic reverse of a Diels–Alder reaction becomes favorable at high temperatures, although this is of synthetic importance for only a limited range of Diels-Alder adducts, generally with some special structural features; this reverse reaction is known as the retro-Diels–Alder reaction.
The 1,3-dipolar cycloaddition is a chemical reaction between a 1,3-dipole and a dipolarophile to form a five-membered ring. The earliest 1,3-dipolar cycloadditions were described in the late 19th century to the early 20th century, following the discovery of 1,3-dipoles. Mechanistic investigation and synthetic application were established in the 1960s, primarily through the work of Rolf Huisgen. Hence, the reaction is sometimes referred to as the Huisgen cycloaddition. 1,3-dipolar cycloaddition is an important route to the regio- and stereoselective synthesis of five-membered heterocycles and their ring-opened acyclic derivatives. The dipolarophile is typically an alkene or alkyne, but can be other pi systems. When the dipolarophile is an alkyne, aromatic rings are generally produced.
In organic chemistry, an alkyne trimerisation is a [2+2+2] cycloaddition reaction in which three alkyne units react to form a benzene ring. The reaction requires a metal catalyst. The process is of historic interest as well as being applicable to organic synthesis. Being a cycloaddition reaction, it has high atom economy. Many variations have been developed, including cyclisation of mixtures of alkynes and alkenes as well as alkynes and nitriles.
Step-growth polymerization refers to a type of polymerization mechanism in which bi-functional or multifunctional monomers react to form first dimers, then trimers, longer oligomers and eventually long chain polymers. Many naturally occurring and some synthetic polymers are produced by step-growth polymerization, e.g. polyesters, polyamides, polyurethanes, etc. Due to the nature of the polymerization mechanism, a high extent of reaction is required to achieve high molecular weight. The easiest way to visualize the mechanism of a step-growth polymerization is a group of people reaching out to hold their hands to form a human chain—each person has two hands. There also is the possibility to have more than two reactive sites on a monomer: In this case branched polymers production take place.
In chemical synthesis, click chemistry is a class of simple, atom-economy reactions commonly used for joining two molecular entities of choice. Click chemistry is not a single specific reaction, but describes a way of generating products that follow examples in nature, which also generates substances by joining small modular units. In many applications, click reactions join a biomolecule and a reporter molecule. Click chemistry is not limited to biological conditions: the concept of a "click" reaction has been used in chemoproteomic, pharmacological, and various biomimetic applications. However, they have been made notably useful in the detection, localization and qualification of biomolecules.
The azide-alkyne Huisgen cycloaddition is a 1,3-dipolar cycloaddition between an azide and a terminal or internal alkyne to give a 1,2,3-triazole. Rolf Huisgen was the first to understand the scope of this organic reaction. American chemist Karl Barry Sharpless has referred to this cycloaddition as "the cream of the crop" of click chemistry and "the premier example of a click reaction".
A triazole is a heterocyclic compound featuring a five-membered ring of two carbon atoms and three nitrogen atoms with molecular formula C2H3N3. Triazoles exhibit substantial isomerism, depending on the positioning of the nitrogen atoms within the ring.
In organic chemistry, a cycloalkyne is the cyclic analog of an alkyne. A cycloalkyne consists of a closed ring of carbon atoms containing one or more triple bonds. Cycloalkynes have a general formula CnH2n−4. Because of the linear nature of the C−C≡C−C alkyne unit, cycloalkynes can be highly strained and can only exist when the number of carbon atoms in the ring is great enough to provide the flexibility necessary to accommodate this geometry. Large alkyne-containing carbocycles may be virtually unstrained, while the smallest constituents of this class of molecules may experience so much strain that they have yet to be observed experimentally. Cyclooctyne is the smallest cycloalkyne capable of being isolated and stored as a stable compound. Despite this, smaller cycloalkynes can be produced and trapped through reactions with other organic molecules or through complexation to transition metals.
Bioconjugation is a chemical strategy to form a stable covalent link between two molecules, at least one of which is a biomolecule.
Morten Peter Meldal is a Danish chemist and Nobel laureate. He is a professor of chemistry at the University of Copenhagen in Copenhagen, Denmark. He is best known for developing the CuAAC-click reaction, concurrently with but independent of Valery V. Fokin and K. Barry Sharpless.
Crystallization of polymers is a process associated with partial alignment of their molecular chains. These chains fold together and form ordered regions called lamellae, which compose larger spheroidal structures named spherulites. Polymers can crystallize upon cooling from melting, mechanical stretching or solvent evaporation. Crystallization affects optical, mechanical, thermal and chemical properties of the polymer. The degree of crystallinity is estimated by different analytical methods and it typically ranges between 10 and 80%, with crystallized polymers often called "semi-crystalline". The properties of semi-crystalline polymers are determined not only by the degree of crystallinity, but also by the size and orientation of the molecular chains.
1-Decyne is the organic compound with the formula C8H17C≡CH. It is a terminal alkyne. A colorless liquid, 1-decyne is used as a model substrate when evaluating methodology in organic synthesis. It participates in a number of classical reactions including Suzuki-Miyaura couplings, Sonogashira couplings, Huisgen cycloadditions, and borylations.
The term bioorthogonal chemistry refers to any chemical reaction that can occur inside of living systems without interfering with native biochemical processes. The term was coined by Carolyn R. Bertozzi in 2003. Since its introduction, the concept of the bioorthogonal reaction has enabled the study of biomolecules such as glycans, proteins, and lipids in real time in living systems without cellular toxicity. A number of chemical ligation strategies have been developed that fulfill the requirements of bioorthogonality, including the 1,3-dipolar cycloaddition between azides and cyclooctynes, between nitrones and cyclooctynes, oxime/hydrazone formation from aldehydes and ketones, the tetrazine ligation, the isocyanide-based click reaction, and most recently, the quadricyclane ligation.
A metal-centered cycloaddition is a subtype of the more general class of cycloaddition reactions. In such reactions "two or more unsaturated molecules unite directly to form a ring", incorporating a metal bonded to one or more of the molecules. Cycloadditions involving metal centers are a staple of organic and organometallic chemistry, and are involved in many industrially-valuable synthetic processes.
A two-dimensional polymer (2DP) is a sheet-like monomolecular macromolecule consisting of laterally connected repeat units with end groups along all edges. This recent definition of 2DP is based on Hermann Staudinger's polymer concept from the 1920s. According to this, covalent long chain molecules ("Makromoleküle") do exist and are composed of a sequence of linearly connected repeat units and end groups at both termini.
A sequence-controlled polymer is a macromolecule, in which the sequence of monomers is controlled to some degree. This control can be absolute but not necessarily. In other words, a sequence-controlled polymer can be uniform or non-uniform (Ð>1). For example, an alternating copolymer synthesized by radical polymerization is a sequence-controlled polymer, even if it is also a non-uniform polymer, in which chains have different chain-lengths and slightly different compositions. A biopolymer with a perfectly-defined primary structure is also a sequence-controlled polymer. However, in the case of uniform macromolecules, the term sequence-defined polymer can also be used.
A carbon nanothread is a sp3-bonded, one-dimensional carbon crystalline nanomaterial. The tetrahedral sp3-bonding of its carbon is similar to that of diamond. Nanothreads are only a few atoms across, more than 20,000 times thinner than a human hair. They consist of a stiff, strong carbon core surrounded by hydrogen atoms. Carbon nanotubes, although also one-dimensional nanomaterials, in contrast have sp2-carbon bonding as is found in graphite. The smallest carbon nanothread has a diameter of only 0.2 nanometers, much smaller than the diameter of a single-wall carbon nanotube.
Vinylcyclopropane [5+2] cycloaddition is a type of cycloaddition between a vinylcyclopropane (VCP) and an olefin or alkyne to form a seven-membered ring.
An organic azide is an organic compound that contains an azide functional group. Because of the hazards associated with their use, few azides are used commercially although they exhibit interesting reactivity for researchers. Low molecular weight azides are considered especially hazardous and are avoided. In the research laboratory, azides are precursors to amines. They are also popular for their participation in the "click reaction" between an azide and an alkyne and in Staudinger ligation. These two reactions are generally quite reliable, lending themselves to combinatorial chemistry.