Alphacoronavirus 1

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Alphacoronavirus 1
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Electron micrograph of Alphacoronavirus 1 of pig (transmissible gastroenteritis coronavirus)
Virus classification Red Pencil Icon.png
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Pisuviricota
Class: Pisoniviricetes
Order: Nidovirales
Family: Coronaviridae
Genus: Alphacoronavirus
Subgenus: Tegacovirus
Species:
Alphacoronavirus 1
Member viruses [1]

Alphacoronavirus 1 is a species of coronavirus that infects cats, dogs and pigs. It includes the virus strains feline coronavirus, canine coronavirus, and transmissible gastroenteritis virus. [1] It is an enveloped, positive-strand RNA virus which is able to enter its host cell by binding to the APN receptor. [2]

Member viruses were first recognised as viruses that caused transmissible gastroenteritis in pigs in 1965. It was originally named porcine transmissible gastroenteritis virus in 1976. After subsequent discovery of canine coronavirus in dogs and feline coronavirus in cats, the three virus species were merged into a single species in 2009. The strain canine coronavirus-HuPn-2018 has been identified in a small number of human cases.

Discovery

In the mid-1940s there was an outbreak of pig disease in US, called transmissible gastroenteritis, which was characterised mainly by diarrhoea and vomiting. It was suspected to be a viral infection and was highly fatal among young pigs. Leo P. Doyle and L. M. Hutchings reported the case in the Journal of the American Veterinary Medical Association in 1946. [3] The virus was identified and isolated by A. W. McClurkin in 1965. [4] The International Committee for the Nomenclature of Viruses (ICNV, later renamed International Committee on Taxonomy of Viruses, ICTV, in 1975) accepted the scientific named Transmissible gastro-enteritis virus of swine in its first report in 1971, but renamed it Porcine transmissible gastroenteritis virus (PTGV) in its second report in 1976. [1]

There was another case of coronavirus infection in cats in 1966. The virus caused inflammation of the abdomen (peritonitis) and was highly fatal. [5] The virus was identified in 1968, [6] and was named as Feline infectious peritonitis virus by ICTV in 1991. It was again renamed Feline coronavirus in 1999. [7] In 1974 there was an outbreak of viral infection among US military dogs. [8] The virus was identified as a coronavirus and the formal name Canine coronavirus was adopted by ICTV in 1991. As the molecular and antigenic relationship of the three viruses were later established in the late 1980s, [9] [10] ICTV merged them into a single species Alphacoronavirus 1 in 2009. [1]

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<span class="mw-page-title-main">Coronavirus</span> Subfamily of viruses in the family Coronaviridae

Coronaviruses are a group of related RNA viruses that cause diseases in mammals and birds. In humans and birds, they cause respiratory tract infections that can range from mild to lethal. Mild illnesses in humans include some cases of the common cold, while more lethal varieties can cause SARS, MERS and COVID-19, which is causing the ongoing pandemic. In cows and pigs they cause diarrhea, while in mice they cause hepatitis and encephalomyelitis.

<span class="mw-page-title-main">SARS-related coronavirus</span> Species of coronavirus causing SARS and COVID-19

Severe acute respiratory syndrome–related coronavirus is a species of virus consisting of many known strains phylogenetically related to severe acute respiratory syndrome coronavirus 1 (SARS-CoV-1) that have been shown to possess the capability to infect humans, bats, and certain other mammals. These enveloped, positive-sense single-stranded RNA viruses enter host cells by binding to the angiotensin-converting enzyme 2 (ACE2) receptor. The SARSr-CoV species is a member of the genus Betacoronavirus and of the subgenus Sarbecovirus.

<i>Coronaviridae</i> Family of viruses in the order Nidovirales

Coronaviridae is a family of enveloped, positive-strand RNA viruses which infect amphibians, birds, and mammals. The group includes the subfamilies Letovirinae and Orthocoronavirinae; the members of the latter are known as coronaviruses.

Avian coronavirus is a species of virus from the genus Gammacoronavirus that infects birds; since 2018, all gammacoronaviruses which infect birds have been classified as this single species. The strain of avian coronavirus previously known as infectious bronchitis virus (IBV) is the only coronavirus that infects chickens. It causes avian infectious bronchitis, a highly infectious disease that affects the respiratory tract, gut, kidney and reproductive system. IBV affects the performance of both meat-producing and egg-producing chickens and is responsible for substantial economic loss within the poultry industry. The strain of avian coronavirus previously classified as Turkey coronavirus causes gastrointestinal disease in turkeys.

<span class="mw-page-title-main">Canine coronavirus</span> Species of virus

Canine coronavirus (CCoV) is an enveloped, positive-sense, single-stranded RNA virus which is a member of the species Alphacoronavirus 1. It causes a highly contagious intestinal disease worldwide in dogs. The infecting virus enters its host cell by binding to the APN receptor. It was discovered in 1971 in Germany during an outbreak in sentry dogs. The virus is a member of the genus Alphacoronavirus and subgenus Tegacovirus.

Porcine parvovirus (PPV), a virus in the species Ungulate protoparvovirus 1 of genus Protoparvovirus in the virus family Parvoviridae, causes reproductive failure of swine characterized by embryonic and fetal infection and death, usually in the absence of outward maternal clinical signs. The disease develops mainly when seronegative dams are exposed oronasally to the virus anytime during about the first half of gestation, and conceptuses are subsequently infected transplacentally before they become immunocompetent. There is no definitive evidence that infection of swine other than during gestation is of any clinical or economic significance. The virus is ubiquitous among swine throughout the world and is enzootic in most herds that have been tested. Diagnostic surveys have indicated that PPV is the major infectious cause of embryonic and fetal death. In addition to its direct causal role in reproductive failure, PPV can potentiate the effects of porcine circovirus type II (PCV2) infection in the clinical course of postweaning multisystemic wasting syndrome (PMWS). Approximately 38 peoples have died of the virus.

<i>Murine coronavirus</i> Species of virus

Murine coronavirus (M-CoV) is a virus in the genus Betacoronavirus that infects mice. Belonging to the subgenus Embecovirus, murine coronavirus strains are enterotropic or polytropic. Enterotropic strains include mouse hepatitis virus (MHV) strains D, Y, RI, and DVIM, whereas polytropic strains, such as JHM and A59, primarily cause hepatitis, enteritis, and encephalitis. Murine coronavirus is an important pathogen in the laboratory mouse and the laboratory rat. It is the most studied coronavirus in animals other than humans, and has been used as an animal disease model for many virological and clinical studies.

Kobuvirus is a genus of viruses in the order Picornavirales, in the family Picornaviridae. Humans and cattle serve as natural hosts. There are six species in this genus. Diseases associated with this genus include: gastroenteritis. The genus was named because of the virus particles' lumpy appearance by electron microscopy; "kobu" means "knob" in Japanese.

<span class="mw-page-title-main">Veterinary virology</span> Study of viruses affecting animals

Veterinary virology is the study of viruses in non-human animals. It is an important branch of veterinary medicine.

Feline coronavirus (FCoV) is a positive-stranded RNA virus that infects cats worldwide. It is a coronavirus of the species Alphacoronavirus 1 which includes canine coronavirus (CCoV) and porcine transmissible gastroenteritis coronavirus (TGEV). It has two different forms: feline enteric coronavirus (FECV) that infects the intestines and feline infectious peritonitis virus (FIPV) that causes the disease feline infectious peritonitis (FIP).

<span class="mw-page-title-main">Transmissible gastroenteritis virus</span> Species of virus

Transmissible gastroenteritis virus or Transmissible gastroenteritis coronavirus (TGEV) is a coronavirus which infects pigs. It is an enveloped, positive-sense, single-stranded RNA virus which enters its host cell by binding to the APN receptor. The virus is a member of the genus Alphacoronavirus, subgenus Tegacovirus, species Alphacoronavirus 1.

Bovine coronavirus is a coronavirus which is a member of the species Betacoronavirus 1. The infecting virus is an enveloped, positive-sense, single-stranded RNA virus which enters its host cell by binding to the N-acetyl-9-O-acetylneuraminic acid recepter. Infection causes calf enteritis and contributes to the enzootic pneumonia complex in calves. It can also cause winter dysentery in adult cattle. It can infect both domestic and wild ruminants and has a worldwide distribution. Transmission is horizontal, via oro-fecal or respiratory routes. Like other coronaviruses from genus Betacoronavirus, subgenus Embecovirus, it has a surface protein called hemagglutinin esterase (HE) in addition to the four structural proteins shared by all coronaviruses.

<i>Alphacoronavirus</i> Genus of viruses

Alphacoronaviruses (Alpha-CoV) are members of the first of the four genera of coronaviruses. They are positive-sense, single-stranded RNA viruses that infect mammals, including humans. They have spherical virions with club-shaped surface projections formed by trimers of the spike protein, and a viral envelope.

<i>Betacoronavirus 1</i> Species of virus

Betacoronavirus 1 is a species of coronavirus which infects humans and cattle. The infecting virus is an enveloped, positive-sense, single-stranded RNA virus and is a member of the genus Betacoronavirus and subgenus Embecovirus. Like other embecoviruses, it has an additional shorter spike-like surface protein called hemagglutinin esterase (HE) as well as the larger coronavirus spike protein.

<i>Human coronavirus 229E</i> Species of virus

Human coronavirus 229E (HCoV-229E) is a species of coronavirus which infects humans and bats. It is an enveloped, positive-sense, single-stranded RNA virus which enters its host cell by binding to the APN receptor. Along with Human coronavirus OC43, it is one of the viruses responsible for the common cold. HCoV-229E is a member of the genus Alphacoronavirus and subgenus Duvinacovirus.

Rhinolophus bat coronavirus HKU2 is a novel enveloped, single-stranded positive-sense RNA virus species in the Alphacoronavirus, or Group 1, genus with a corona-like morphology.

Scotophilus bat coronavirus 512 is an enveloped, single-stranded positive-sense RNA virus species in the Alphacoronavirus, or Group 1, genus with a corona-like morphology. It was isolated from a lesser Asiatic yellow house bat discovered in southern China.

<i>Coronavirus HKU15</i> Species of virus

Coronavirus HKU15, sometimes called Porcine coronavirus HKU15 is a virus first discovered in a surveillance study in Hong Kong, China, and first reported to be associated with porcine diarrhea in February 2014. In February 2014, PorCoV HKU15 was identified in pigs with clinical diarrhea disease in the U.S. state of Ohio. The complete genome of one US strain has been published. Since then, it has been identified in pig farms in Canada. The virus has been referred to as Porcine coronavirus HKU15, Swine deltacoronavirus and Porcine deltacoronavirus.

<span class="mw-page-title-main">Coronavirus diseases</span> List of Coronavirus diseases

Coronavirus diseases are caused by viruses in the coronavirus subfamily, a group of related RNA viruses that cause diseases in mammals and birds. In humans and birds, the group of viruses cause respiratory tract infections that can range from mild to lethal. Mild illnesses in humans include some cases of the common cold, while more lethal varieties can cause SARS, MERS and COVID-19. As of 2021, 45 species are registered as coronaviruses, whilst 11 diseases have been identified, as listed below.

<span class="mw-page-title-main">History of coronavirus</span> History of the virus group

The history of coronaviruses is an account of the discovery of the diseases caused by coronaviruses and the diseases they cause. It starts with the first report of a new type of upper-respiratory tract disease among chickens in North Dakota, U.S., in 1931. The causative agent was identified as a virus in 1933. By 1936, the disease and the virus were recognised as unique from other viral disease. They became known as infectious bronchitis virus (IBV), but later officially renamed as Avian coronavirus.

References

  1. 1 2 3 4 "ICTV Taxonomy history: Alphacoronavirus 1". International Committee on Taxonomy of Viruses (ICTV). Retrieved 2020-08-19.
  2. Fehr AR, Perlman S (2015). "Coronaviruses: an overview of their replication and pathogenesis". In Maier HJ, Bickerton E, Britton P (eds.). Coronaviruses. Methods in Molecular Biology. Vol. 1282. Springer. pp. 1–23. doi:10.1007/978-1-4939-2438-7_1. ISBN   978-1-4939-2438-7. PMC   4369385 . PMID   25720466. See Table 1.
  3. Doyle, L. P.; Hutchings, L. M. (1946). "A transmissible gastroenteritis in pigs". Journal of the American Veterinary Medical Association. 108: 257–259. PMID   21020443.
  4. Mcclurkin, A. W. (1965). "Studies on transmissible gastroenteritis of swine I. The isolation and identification of a cytopathogenic virus of transmissible gastroenteritis in primary swine kidney cell cultures". Canadian Journal of Comparative Medicine and Veterinary Science. 29 (2): 46–53. PMC   1494364 . PMID   14290945.
  5. Wolfe, L.G.; Griesemer, R.A. (1966). "Feline infectious peritonitis". Pathologia Veterinaria. 3 (3): 255–270. doi:10.1177/030098586600300309. PMID   5958991. S2CID   12930790.
  6. Zook, B. C.; King, N. W.; Robison, R. L.; McCombs, H. L. (1968). "Ultrastructural evidence for the viral etiology of feline infectious peritonitis". Pathologia Veterinaria. 5 (1): 91–95. doi:10.1177/030098586800500112. S2CID   73331347.
  7. "ICTV Taxonomy history: Feline infectious peritonitis virus". International Committee on Taxonomy of Viruses (ICTV). Retrieved 2020-08-18.
  8. Binn, L. N.; Lazar, E. C.; Keenan, K. P.; Huxsoll, D. L.; Marchwicki, R. H.; Strano, A. J. (1974). "Recovery and characterization of a coronavirus from military dogs with diarrhea". Proceedings, Annual Meeting of the United States Animal Health Association (78): 359–366. PMID   4377955.
  9. Jacobs, L.; de Groot, R.; van der Zeijst, B. A.; Horzinek, M. C.; Spaan, W. (1987). "The nucleotide sequence of the peplomer gene of porcine transmissible gastroenteritis virus (TGEV): comparison with the sequence of the peplomer protein of feline infectious peritonitis virus (FIPV)". Virus Research. 8 (4): 363–371. doi:10.1016/0168-1702(87)90008-6. PMC   7134191 . PMID   2829461.
  10. Hohdatsu, T.; Okada, S.; Koyama, H. (1991). "Characterization of monoclonal antibodies against feline infectious peritonitis virus type II and antigenic relationship between feline, porcine, and canine coronaviruses". Archives of Virology. 117 (1–2): 85–95. doi:10.1007/BF01310494. PMC   7086586 . PMID   1706593.