Laboratory informatics

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Laboratory informatics is the specialized application of information technology aimed at optimizing and extending laboratory operations. [1] It encompasses data acquisition (e.g. through sensors and hardware [2] or voice [3] [4] [5] ), instrument interfacing, laboratory networking, data processing, specialized data management systems (such as a chromatography data system), a laboratory information management system, scientific data management (including data mining and data warehousing), and knowledge management (including the use of an electronic lab notebook). It has become more prevalent with the rise of other "informatics" disciplines such as bioinformatics, cheminformatics and health informatics. Several graduate programs are focused on some form of laboratory informatics, often with a clinical emphasis. [6] A closely related - some consider subsuming - field is laboratory automation.

Contents

Capability Areas

In the context of Public Health Laboratories, the Association of Public Health Laboratories has identified 19 areas for self-assessment of laboratory informatics in their Laboratories Efficiencies Initiative. [7] These include the following Capability Areas.

Sub-topics

Organizations

Publications

See also

Further reading

Related Research Articles

<span class="mw-page-title-main">Clinical chemistry</span> Area of clinical pathology that is generally concerned with analysis of bodily fluids

Clinical chemistry is a division in medical laboratory sciences focusing on qualitative tests of important compounds, referred to as analytes or markers, in bodily fluids and tissues using analytical techniques and specialized instruments. This interdisciplinary field includes knowledge from medicine, biology, chemistry, biomedical engineering, informatics, and an applied form of biochemistry.

<span class="mw-page-title-main">Symyx Technologies</span>

Symyx Technologies, Inc. was a company that specialized in informatics and automation products. Symyx provided software solutions for scientific research, including Enterprise Laboratory Notebooks and products for combinatorial chemistry. The software part of the business became part of Accelrys, Inc. in 2010 and then in 2014 this company merged with Dassault Systèmes. Symyx also offered laboratory robotics systems for performing automated chemical research, which in 2010 was spun out as Freeslate, Inc.

<span class="mw-page-title-main">Health informatics</span> Applications of information processing concepts and machinery in medicine

Health informatics is the field of science and engineering that aims at developing methods and technologies for the acquisition, processing, and study of patient data, which can come from different sources and modalities, such as electronic health records, diagnostic test results, medical scans. The health domain provides an extremely wide variety of problems that can be tackled using computational techniques.

<span class="mw-page-title-main">Laboratory information management system</span> Software infrastructure for improving research and storing data

A laboratory information management system (LIMS), sometimes referred to as a laboratory information system (LIS) or laboratory management system (LMS), is a software-based solution with features that support a modern laboratory's operations. Key features include—but are not limited to—workflow and data tracking support, flexible architecture, and data exchange interfaces, which fully "support its use in regulated environments". The features and uses of a LIMS have evolved over the years from simple sample tracking to an enterprise resource planning tool that manages multiple aspects of laboratory informatics.

<span class="mw-page-title-main">Electronic health record</span> Digital collection of patient and population electronically stored health information

An electronic health record (EHR) is the systematized collection of patient and population electronically stored health information in a digital format. These records can be shared across different health care settings. Records are shared through network-connected, enterprise-wide information systems or other information networks and exchanges. EHRs may include a range of data, including demographics, medical history, medication and allergies, immunization status, laboratory test results, radiology images, vital signs, personal statistics like age and weight, and billing information.

An electronic lab notebook is a computer program designed to replace paper laboratory notebooks. Lab notebooks in general are used by scientists, engineers, and technicians to document research, experiments, and procedures performed in a laboratory. A lab notebook is often maintained to be a legal document and may be used in a court of law as evidence. Similar to an inventor's notebook, the lab notebook is also often referred to in patent prosecution and intellectual property litigation.

MDL Information Systems, Inc. was a provider of R&D informatics products for the life sciences and chemicals industries. The company was launched as a computer-aided drug design firm in January 1978 in Hayward, California. The company was acquired by Symyx Technologies, Inc. in 2007. Subsequently Accelrys merged with Symyx. The Accelrys name was retained for the combined company. In 2014 Accelrys was acquired by Dassault Systemes. The Accelrys business unit was renamed BIOVIA.

<span class="mw-page-title-main">Laboratory automation</span>

Laboratory automation is a multi-disciplinary strategy to research, develop, optimize and capitalize on technologies in the laboratory that enable new and improved processes. Laboratory automation professionals are academic, commercial and government researchers, scientists and engineers who conduct research and develop new technologies to increase productivity, elevate experimental data quality, reduce lab process cycle times, or enable experimentation that otherwise would be impossible.

BIOVIA is a software company headquartered in the United States, with representation in Europe and Asia. It provides software for chemical, materials and bioscience research for the pharmaceutical, biotechnology, consumer packaged goods, aerospace, energy and chemical industries.

The ISO/TC 215 is the International Organization for Standardization's (ISO) Technical Committee (TC) on health informatics. TC 215 works on the standardization of Health Information and Communications Technology (ICT), to allow for compatibility and interoperability between independent systems.

<span class="mw-page-title-main">Medical laboratory</span> Principles of management with special reference to medical science

A medical laboratory or clinical laboratory is a laboratory where tests are conducted out on clinical specimens to obtain information about the health of a patient to aid in diagnosis, treatment, and prevention of disease. Clinical medical laboratories are an example of applied science, as opposed to research laboratories that focus on basic science, such as found in some academic institutions.

<span class="mw-page-title-main">Rod Markin</span>

Rodney Smith Markin, is an American pathologist and authority in the field of laboratory automation. In 1993, he designed and created one of the world's first automated clinical laboratory specimen, device and analyzer management systems. In the mid-1990s, he chaired a standards group called the Clinical Testing Automation Standards Steering Committee (CTASSC) of the American Association for Clinical Chemistry, which later evolved into an area committee of the Clinical and Laboratory Standards Institute.

STARLIMS Corporation (Starlims) is a subsidiary of Francisco Partners that provides web-based laboratory information management systems.

<span class="mw-page-title-main">LabLynx</span>

LabLynx, Inc. is a privately owned, funded, and managed American corporation that develops, supports, and markets laboratory information management system (LIMS) solutions. Its primary offerings over the years have included webLIMS and ELab. The company’s primary clients include laboratories in the agriculture, clinical, environmental, forensics, health care, and manufacturing industries, including government agencies. The company is known for introducing one of the first browser-based LIMS products in 1997 and being in the laboratory informatics industry for decades.

Dotmatics is an R&D scientific software company used by scientists in the R&D process that help them be more efficient in their efforts to innovate. Founded in 2005, the company's primary office is in Boston with 14 offices around the globe. In March 2021, Dotmatics joined forces with Insightful Science through a merger. In April 2022, the two companies consolidated under the Dotmatics brand. Dotmatics' software is used by 2 million scientists and researchers and 10,000 customers.

LabWare, Inc. is an American developer of laboratory informatics software, such as laboratory information management systems, electronic laboratory notebooks and laboratory data analytics. It is a Delaware corporation, with offices in Wilmington, Delaware.

LabArchives is a line of cloud-based electronic lab notebooks (ELNs) sold by LabArchives, LLC, which was founded in 2009 by Earl B. Beutler and Kirk Schneider.

References

  1. Perry, Douglas. Laboratory Informatics: Origin, Scope, and its Place in Higher Education: Journal of Laboratory Information, December 2004, 9(6), 421-428
  2. Padhee, Subhransu; Prusty, Sankata Bhanjan; Biswal, Aditya P.; Pati, Umesh Chandra (2016). "Design of an educational laboratory for measurement and data acquisition system". IEEE Students' Conference on Electrical, Electronics and Computer Science (SCEECS). Bhopal, India: IEEE: 1–6. doi:10.1109/SCEECS.2016.7509298. ISBN   978-1-4673-7918-2. S2CID   8891397.
  3. "LabTwin's AI-powered Digital Assistant Now Talks Back and Connects Data Sources in the Lab with New Open API". The Scientist Magazine®. Retrieved 2020-02-26.
  4. Singh, Guru. "Why We Use Voice Technology". www.labtwin.com. Retrieved 2020-02-26.
  5. Behrman, Alison (2017-08-28). Speech and Voice Science, Third Edition. Plural Publishing. ISBN   978-1-63550-075-2.
  6. "Laboratory Informatics". University of Nebraska Medical Center. Archived from the original on 2015-05-12. Retrieved 2016-04-09.
  7. "Informatics Self-Assessment Tool for Public Health Laboratories" (PDF). www.aphl.org. 2013. Archived from the original (PDF) on 2016-12-20. Retrieved 2016-12-17.