Leek yellow stripe virus

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Leek yellow stripe virus
Virus classification OOjs UI icon edit-ltr.svg
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Pisuviricota
Class: Stelpaviricetes
Order: Patatavirales
Family: Potyviridae
Genus: Potyvirus
Species:
Leek yellow stripe virus

Leek yellow stripe virus (LYSV) belongs to the genus Potyvirus . It was first detected in leek but also infects garlic and onion worldwide. [1] [2] [3] Economically less important Allium spp., such as Allium angulosum , Allium caeruleum , Allium cyathophorum , Allium nutans , Allium scorodoprasum , Allium senescens subsp. montanum were also found to harbor the virus. [4]

Contents

Epidemiology

LYSV causes typical yellow stripe symptom on leek. A yield reduction of up to 54% on garlic has been reported. [5] The virus is transmitted in non-persistent manner by Aphis fabae and Myzus persicae but not by seeds. [6] [7]

Genome

Its ssRNA genome has one large open reading frame (ORF) that encodes a polyprotein of ca. 10,131 nt and 3,152 amino acids, excluding the poly-(A) tail. [8] LYSV can be separated into three major types: S, L, and N based on variation in the P1 and coat protein (CP) regions of its genome and plant host species. Types-S and N isolates are mostly infecting garlic while type-L is infecting leek. [9]

Control

Several researches had been conducted to determine resistant or tolerant Allium spp. cultivars, as an epidemiological method to control LYSV. Three French garlic cultivars were tested against the virus, with result Messidrome had the least severe bulb weight loss (17%) compared to Germidour (26%) and Printanor (54%). [10] Another study in French found that a fertile garlic clone (clone 211) was highly resistant to LYSV infection. [11] All 87 samples of Vekan variety collected during field surveys in Czech Republic were tested to be LYSV-free, which highly indicated its resistance to the virus. [12] Recently, Şampiyon and Perama were found to have the best reactions (most tolerant) among 15 onion cultivars tested in Turkey to mechanical inoculation of LYSV under greenhouse conditions. [13]

Related Research Articles

<span class="mw-page-title-main">Garlic</span> Species of edible plant

Garlic is a species of bulbous flowering plant in the genus Allium. Its close relatives include the onion, shallot, leek, chive, Welsh onion, and Chinese onion. It is native to South Asia, Central Asia and northeastern Iran and has long been used as a seasoning worldwide, with a history of several thousand years of human consumption and use. It was known to ancient Egyptians and has been used as both a food flavoring and a traditional medicine. China produced 73% of the world's supply of garlic in 2021.

<span class="mw-page-title-main">Onion</span> Bulbous vegetable, grown for food

An onion, also known as the bulb onion or common onion, is a vegetable that is the most widely cultivated species of the genus Allium. The shallot is a botanical variety of the onion which was classified as a separate species until 2011. Its close relatives include garlic, scallion, leek, and chive.

<span class="mw-page-title-main">Plum pox</span> Viral plant disease

Plum pox, also known as sharka, is the most devastating viral disease of stone fruit from the genus Prunus. The disease is caused by the plum pox virus (PPV), and the different strains may infect a variety of stone fruit species including peaches, apricots, plums, nectarine, almonds, and sweet and tart cherries. Wild and ornamental species of Prunus may also become infected by some strains of the virus.

<i>Allium moly</i> Species of flowering plant

Allium moly, also known as yellow garlic, golden garlic and lily leek, Is a species of flowering plant in the genus Allium, which also includes the flowering and culinary onions and garlic. A bulbous herbaceous perennial from the Mediterranean, it is edible and also used as a medicinal and ornamental plant.

Pyrenochaeta terrestris is a fungal plant pathogen that infects maize, sweet potatoes, and strawberries. This plant pathogen causes a disease in onion that is commonly called pink root. P. terrestris is also known to infect shallots, garlic, leeks, chives, cantaloupe, carrots, cauliflower, cowpea, cucumbers, eggplants, lima beans, millet, oats, peas, peppers, potatoes, spinach, sugarcane, and tomatoes.

<i>Cucumber mosaic virus</i> Species of virus

Cucumber mosaic virus (CMV) is a plant pathogenic virus in the family Bromoviridae. This virus has a worldwide distribution and a very wide host range, having the reputation of the widest host range of any known plant virus. It can be transmitted from plant to plant both mechanically by sap and by aphids in a stylet-borne fashion. It can also be transmitted in seeds and by the parasitic weeds, Cuscuta sp. (dodder).

Potato virus S (PVS) is a plant pathogenic virus. It was first reported in Netherlands. PVS causes mild or no symptoms in most potato varieties. It is common in potatoes in many regions and does not cause significant yield losses. Field-grown potatoes are not routinely screened for this virus because it is not considered economically important. However, PVS often present in mixed infections with other potato viruses, which may accentuate symptom severity.

Prune dwarf virus (PDV) is an economically important plant pathogenic virus affecting Prunus species globally. PDV is found worldwide due to easy transmission through seed, pollen, and vegetative propagation. The virus is in the family Bromoviridae an important family of plant RNA viruses containing six genera, including Alfamovirus, Ilarvirus, Bromovirus, Amularvirus, Oleavirus, and Cucumovirus. PDV belongs to the genera Ilarvirus. It can cause dwarfism of leaves on certain prune and plum plants. It will also cause yellows in sour cherry, especially when present with Prunus necrotic ringspot virus. There are no known transmission vectors, though the pollen of infected cherry trees has been found to infect other cherry trees a small percent of the time.

<i>Prunus necrotic ringspot virus</i> Species of virus

Prunus necrotic ringspot virus (PNRSV) is a plant pathogenic virus causing ring spot diseases affecting species of the genus Prunus, as well as other species such as rose and hops. PNRSV is found worldwide due to easy transmission through plant propagation methods and infected seed. The virus is in the family Bromoviridae and genus Ilarvirus. Synonyms of PNRSV include European plum line pattern virus, hop B virus, hop C virus, plum line pattern virus, sour cherry necrotic ringspot virus, and peach ringspot virus.

Apium virus Y (ApVY) is a plant pathogenic virus in the genus Potyvirus and the virus family Potyviridae.

<i>Peronospora destructor</i> Species of single-celled organism

Peronospora destructor is a plant pathogen. It causes downy mildew on leaves of cultivated and wild Allium. Allium cepa is most often affected, while Allium schoenoprasum (chives) and Allium porrum (leek) are only occasionally affected.

<i>Candidatus</i> Phytoplasma solani Species of bacterium

"Candidatus Phytoplasma solani" is a phytopathogenic bacterial Phytoplasma species of the 16SrXII group, the causal agent of the black wood of grapevine. The black wood of grapevine disease is classified as part of the grapevine yellows.

Mastrevirus is a genus of ssDNA viruses, in the family Geminiviridae. Mostly monocotyledonous plants serve as natural hosts. They are vectored by planthoppers. There are 45 species in this genus. Diseases associated with this genus include: maize streak virus: maize streak disease (MSD).

<i>Allium</i> Genus of flowering plants in the family Amaryllidaceae

Allium is a genus of monocotyledonous flowering plants with hundreds of species, including the cultivated onion, garlic, scallion, shallot, leek, and chives. The generic name Allium is the Latin word for garlic, and the type species for the genus is Allium sativum which means "cultivated garlic".

<span class="mw-page-title-main">Leek</span> Vegetable in the onion family

The leek is a vegetable, a cultivar of Allium ampeloprasum, the broadleaf wild leek. The edible part of the plant is a bundle of leaf sheaths that is sometimes erroneously called a stem or stalk. The genus Allium also contains the onion, garlic, shallot, scallion, chives, and Chinese onion. Three closely related vegetables, elephant garlic, kurrat and Persian leek or tareh, are also cultivars of A. ampeloprasum, although different in their uses as food.

<i>Onion yellow dwarf virus</i> Species of virus

Onion yellow dwarf virus (OYDV) is a plant virus in the genus Potyvirus that has been identified worldwide and mainly infects species of Allium such as onion, garlic, and leek. The virus causes mild to severe leaf malformation, and bulb reduction up to sixty percent has been observed in garlic.

Garlic common latent virus (GarCLV) is a plant virus member of the genus Carlavirus that has been found infecting garlic globally. Detection of the virus in leek and onion has also been reported.

Shallot latent virus (SLV), a species of Carlavirus, was first identified in shallots in Netherlands. The virus particle is elongated, 650 nm in length.

<i>Puccinia porri</i> Fungus that causes leek rust

Puccinia porri is a species of rust fungus that causes leek rust. It affects leek, garlic, onion, and chives, and usually appears as bright orange spots on infected plants.

Citrus chlorotic dwarf-associated virus has been so far found in Turkey, China, and Thailand. Isolates from the three countries are genetically highly identical. CCDaV is currently considered as an emerging virus that threatens citrus plantations in the Mediterranean region.

References

  1. Bos, L.; Huijberts, N.; Huttinga, H.; Maat, D. Z. (September 1978). "Leek yellow stripe virus and its relationships to onion yellow dwarf virus; characterization, ecology and possible control". Netherlands Journal of Plant Pathology. 84 (5): 185–204. doi:10.1007/BF02650386. S2CID   32356459.
  2. Takaki, F.; Sano, T.; Yamashita, K.; Fujita, T.; Ueda, K.; Kato, T. (1 June 2005). "Complete nucleotide sequences of attenuated and severe isolates of Leek yellow stripe virus from garlic in northern Japan: Identification of three distinct virus types in garlic and leek world-wide". Archives of Virology. 150 (6): 1135–1149. doi:10.1007/s00705-004-0482-9. PMID   15703850. S2CID   11176245.
  3. Santosa, Adyatma Irawan; Ertunc, Filiz (August 2020). "Identification, molecular detection and phylogenetic analysis of four viruses infecting Allium cepa in Ankara Province, Turkey". Journal of Plant Diseases and Protection. 127 (4): 561–569. doi:10.1007/s41348-020-00347-5. S2CID   225488130.
  4. Mansouri, Faten; Krahulec, František; Duchoslav, Martin; Ryšánek, Pavel (2021-05-21). "Newly identified host range of viruses infecting species of the genus Allium and their distribution in six habitats in the Czech Republic". Plant Pathology. 70 (6): 1496–1507. doi:10.1111/ppa.13391. S2CID   235584351.
  5. Lot, Hervé; Chovelon, Véronique; Souche, Sylvie; Delecolle, Brigitte (December 1998). "Effects of Onion Yellow Dwarf and Leek Yellow Stripe Viruses on Symptomatology and Yield Loss of Three French Garlic Cultivars". Plant Disease. 82 (12): 1381–1385. doi:10.1094/PDIS.1998.82.12.1381. PMID   30845474.
  6. Noda, Chiyoichi; Inouye, Narinobu (1989). "Leek yellow stripe virus isolated from an ornamental Allium plant in Japan". Japanese Journal of Phytopathology. 55 (2): 208–215. doi: 10.3186/jjphytopath.55.208 .
  7. Lunello, P; Ducasse, DA; Helguera, M; Nome, SF; Conci, VC (2002). "An Argentinean isolate of Leek yellow stripe virus from leek can be transmitted to garlic". J. Plant Pathol. 84 (1): 11–17. doi:10.4454/jpp.v84i1.1082 (inactive 31 January 2024).{{cite journal}}: CS1 maint: DOI inactive as of January 2024 (link)
  8. Gupta, N.; Islam, S.; Sharma, S.K.; Baranwal, V.K. (13 October 2017). "Complete Genome Sequence of an Isolate of Leek Yellow Stripe Virus from Garlic in India". Journal of Plant Pathology. 99 (3). doi:10.4454/jpp.v99i3.3945 (inactive 2024-02-01).{{cite journal}}: CS1 maint: DOI inactive as of February 2024 (link)
  9. Santosa, Adyatma Irawan; Randa-Zelyüt, Filiz; Karanfil, Ali; Korkmaz, Savaş; Hartono, Sedyo; Ertunç, Filiz (February 2023). "Phylogenetic and diversity analyses revealed that leek yellow stripe virus population consists of three types: S, L, and N". Virus Genes. 59 (1): 121–131. doi:10.1007/s11262-022-01956-y. PMID   36346570.
  10. Lot, Hervé; Chovelon, Véronique; Souche, Sylvie; Delecolle, Brigitte (December 1998). "Effects of Onion Yellow Dwarf and Leek Yellow Stripe Viruses on Symptomatology and Yield Loss of Three French Garlic Cultivars". Plant Disease. 82 (12): 1381–1385. doi:10.1094/PDIS.1998.82.12.1381. PMID   30845474.
  11. Lot, H.; Chovelon, V.; Souche, S.; Delecolle, B.; Etoh, T.; Messiaen, C.M. (June 2001). "Resistance to Onion Yellow Dwarf Virus and Leek Yellow Stripe Virus Found in a Fertile Garlic Clone". Acta Horticulturae (555): 243–246. doi:10.17660/ActaHortic.2001.555.36.
  12. Klukáčková, J.; Navrátil, M.; Duchoslav, M. (1 June 2007). "Natural infection of garlic (Allium sativum L.) by viruses in the Czech Republic". Journal of Plant Diseases and Protection. 114 (3): 97–100. doi:10.1007/BF03356714. S2CID   56085690.
  13. Santosa, Adyatma Irawan; Ertunç, Filiz (30 March 2021). "Reactions of Fifteen Onion Cultivars Commonly Cultivated in Turkey to Leek yellow stripe virus (LYSV) (Türkiye'de Yaygın Olarak Üretilen On Beş Soğan Çeşidinin Leek yellow stripe virus (LYSV)'üne Karşı Reaksiyonları)". Yüzüncü Yıl Üniversitesi Tarım Bilimleri Dergisi. 31 (1): 71–79. doi: 10.29133/yyutbd.748558 . S2CID   233553746.