Plant DNA C-values Database

Last updated

The Plant DNA C-values Database (https://cvalues.science.kew.org/) is a comprehensive catalogue of C-value (nuclear DNA content, or in diploids, genome size) data for land plants and algae. The database was created by Prof. Michael D. Bennett and Dr. Ilia J. Leitch of the Royal Botanic Gardens, Kew, UK. The database was originally launched as the "Angiosperm DNA C-values Database" in April 1997, essentially as an online version of collected data lists that had been published by Prof. Bennett and colleagues since the 1970s. Release 1.0 of the more inclusive Plant DNA C-values Database was launched in 2001, with subsequent releases 2.0 in January 2003 and 3.0 in December 2004. In addition to the angiosperm dataset made available in 1997, the database has been expanded taxonomically several times and now includes data from pteridophytes (since 2000), gymnosperms (since 2001), bryophytes (since 2001), and algae (since 2004) (see (1) for update history). (Note that each of these subset databases is cited individually as they may contain different sets of authors).

The most recent release of the database (release 7.1) went live in April 2019. It contains data for 12,273 species of plants comprising 10,770 angiosperms, 421 gymnosperms, 303 pteridophytes (246 ferns and fern allies and 57 lycophytes), 334 bryophytes, and 445 algae.

A similar Animal Genome Size Database was created in 2001 by Dr. T. Ryan Gregory of the University of Guelph, Canada.

Related Research Articles

Apiales Order of eudicot flowering plants in the asterid group

The Apiales are an order of flowering plants. The families are those recognized in the APG III system. This is typical of the newer classifications, though there is some slight variation and in particular, the Torriceliaceae may be divided.

Gametophyte Haploid stage in the life cycle of plants and algae

A gametophyte is one of the two alternating multicellular phases in the life cycles of plants and algae. It is a haploid multicellular organism that develops from a haploid spore that has one set of chromosomes. The gametophyte is the sexual phase in the life cycle of plants and algae. It develops sex organs that produce gametes, haploid sex cells that participate in fertilization to form a diploid zygote which has a double set of chromosomes. Cell division of the zygote results in a new diploid multicellular organism, the second stage in the life cycle known as the sporophyte. The sporophyte can produce haploid spores by meiosis that on germination produce a new generation of gametophytes.

Flowering plant Clade of seed plants that produce flowers

Flowering plants are plants that bear flowers and fruits, and form the clade Angiospermae, commonly called angiosperms. The term "angiosperm" is derived from the Greek words angeion and sperma ('seed'), and refers to those plants that produce their seeds enclosed within a fruit. They are the most diverse group of land plants with 64 orders, 416 families, approximately 13,000 known genera and 300,000 known species. Angiosperms were formerly called Magnoliophyta.

Nymphaeaceae Family of plants

Nymphaeaceae is a family of flowering plants, commonly called water lilies. They live as rhizomatous aquatic herbs in temperate and tropical climates around the world. The family contains five genera with about 70 known species. Water lilies are rooted in soil in bodies of water, with leaves and flowers floating on or emergent from the surface. Leaves are round, with a radial notch in Nymphaea and Nuphar, but fully circular in Victoria and Euryale. It is the national flower of Bangladesh.

Araliaceae Family of flowering plants

The Araliaceae are a family of flowering plants composed of about 43 genera and around 1500 species consisting of primarily woody plants and some herbaceous plants. The morphology of Araliaceae varies widely, but it is predominantly distinguishable based on its woody habit, tropical distribution, and the presence of simple umbels.

Gnetophyta Division of plants containing three genera of gymnosperms

Gnetophyta is a division of plants, grouped within the gymnosperms, that consists of some 70 species across the three relict genera: Gnetum, Welwitschia, and Ephedra. Fossilized pollen attributed to a close relative of Ephedra has been dated as far back as the Early Cretaceous. Though diverse in the Early Cretaceous, only three families, each containing a single genus, are still alive today. The primary difference between gnetophytes and other gymnosperms is the presence of vessel elements, a system of conduits that transport water within the plant, similar to those found in flowering plants. Because of this, gnetophytes were once thought to be the closest gymnosperm relatives to flowering plants, but more recent molecular studies have brought this hypothesis into question.

<i>Amborella</i> Species of shrub

Amborella is a monotypic genus of understory shrubs or small trees endemic to the main island, Grande Terre, of New Caledonia. The genus is the only member of the family Amborellaceae and the order Amborellales and contains a single species, Amborella trichopoda. Amborella is of great interest to plant systematists because molecular phylogenetic analyses consistently place it as the sister group to all other flowering plants.

Gymnosperm Clade of non-flowering, naked-seeded vascular plants

The gymnosperms are a group of seed-producing plants that includes conifers, cycads, Ginkgo, and gnetophytes, forming the clade Gymnospermae, the living members of which are also known as Acrogymnospermae. The term gymnosperm comes from the composite word in Greek: γυμνόσπερμος, literally meaning 'naked seeds'. The name is based on the unenclosed condition of their seeds. The non-encased condition of their seeds contrasts with the seeds and ovules of flowering plants (angiosperms), which are enclosed within an ovary. Gymnosperm seeds develop either on the surface of scales or leaves, which are often modified to form cones, or solitary as in yew, Torreya, Ginkgo. Gymnosperm lifecycles involve alternation of generations. They have a dominant diploid sporophyte phase and a reduced haploid gametophyte phase which is dependent on the sporophytic phase.

Embryophyte Subclade of green plants, also known as land plants

The Embryophyta, or land plants, are the most familiar group of green plants that comprise vegetation on Earth. Embryophyta is a clade within the Phragmoplastophyta, a larger clade that also includes several groups of green algae including the Charophyceae and Coleochaetales. Within this larger clade the embryophytes are sister to the Zygnematophyceae/Mesotaeniaceae and consist of the bryophytes plus the polysporangiophytes. Living embryophytes therefore include hornworts, liverworts, mosses, lycophytes, ferns, gymnosperms and flowering plants.

Dioecy is a characteristic of a species, meaning that it has distinct individual organisms that produce male or female gametes, either directly or indirectly. Dioecious reproduction is biparental reproduction. Dioecy has costs, since only about half the population directly produces offspring. It is one method for excluding self-fertilization and promoting allogamy (outcrossing), and thus tends to reduce the expression of recessive deleterious mutations present in a population. Plants have several other methods of preventing self-fertilization including, for example, dichogamy, herkogamy, and self-incompatibility.

C-value is the amount, in picograms, of DNA contained within a haploid nucleus or one half the amount in a diploid somatic cell of a eukaryotic organism. In some cases, the terms C-value and genome size are used interchangeably; however, in polyploids the C-value may represent two or more genomes contained within the same nucleus. Greilhuber et al. have suggested some new layers of terminology and associated abbreviations to clarify this issue, but these somewhat complex additions are yet to be used by other authors.

Genome size

Genome size is the total amount of DNA contained within one copy of a single complete genome. It is typically measured in terms of mass in picograms or less frequently in daltons, or as the total number of nucleotide base pairs, usually in megabases. One picogram is equal to 978 megabases. In diploid organisms, genome size is often used interchangeably with the term C-value.

The Animal Genome Size Database is a catalogue of published genome size estimates for vertebrate and invertebrate animals. It was created in 2001 by Dr. T. Ryan Gregory of the University of Guelph in Canada. As of September 2005, the database contains data for over 4,000 species of animals. A similar database, the Plant DNA C-values Database was created by researchers at the Royal Botanic Gardens, Kew, in 1997.

Evolutionary history of plants Origin and diversification of plants through geologic time

The evolution of plants has resulted in a wide range of complexity, from the earliest algal mats, through multicellular marine and freshwater green algae, terrestrial bryophytes, lycopods and ferns, to the complex gymnosperms and angiosperms of today. While many of the earliest groups continue to thrive, as exemplified by red and green algae in marine environments, more recently derived groups have displaced previously ecologically dominant ones; for example, the ascendance of flowering plants over gymnosperms in terrestrial environments.

Evolutionary developmental biology (evo-devo) is the study of developmental programs and patterns from an evolutionary perspective. It seeks to understand the various influences shaping the form and nature of life on the planet. Evo-devo arose as a separate branch of science rather recently. An early sign of this occurred in 1999.

The following outline is provided as an overview of and topical guide to botany:

Plant Kingdom of mainly multicellular, predominantly photosynthetic eukaryotes

Plants are predominantly photosynthetic eukaryotes of the kingdom Plantae. Historically, the plant kingdom encompassed all living things that were not animals, and included algae and fungi; however, all current definitions of Plantae exclude the fungi and some algae, as well as the prokaryotes. By one definition, plants form the clade Viridiplantae, a group that includes the flowering plants, conifers and other gymnosperms, ferns and their allies, hornworts, liverworts, mosses, and the green algae, but excludes the red and brown algae.

Basal angiosperms Descendants of most extant flowering plants

The basal angiosperms are the flowering plants which diverged from the lineage leading to most flowering plants. In particular, the most basal angiosperms were called the ANITA grade which is made up of Amborella, Nymphaeales and Austrobaileyales.

Spermatophyte Clade of seed plants

A spermatophyte, also known as phanerogam or phaenogam, is any plant that produces seeds, hence the alternative name seed plant. Spermatophytes are a subset of the embryophytes or land plants.

Douglas Soltis is a Distinguished Professor in the Laboratory of Molecular Systematics & Evolutionary Genetics, Florida Museum of Natural History and Department of Biology at the University of Florida. His research interests are in plant evolution and phylogeny, an area in which he has published extensively together with his wife Pamela Soltis and together they were the joint awardees of the 2006 Asa Gray Award. They are the principal investigators in the Soltis laboratory, where they both hold the rank of Distinguished Professor and are contributing authors of the Angiosperm Phylogeny Group.

References