Cnidaria is a phylum under kingdom Animalia containing over 11,000 species of aquatic animals found both in fresh water and marine environments, including jellyfish, hydroids, sea anemones, corals and some of the smallest marine parasites. Their distinguishing features are a decentralized nervous system distributed throughout a gelatinous body and the presence of cnidocytes or cnidoblasts, specialized cells with ejectable flagella used mainly for envenomation and capturing prey. Their bodies consist of mesoglea, a non-living, jelly-like substance, sandwiched between two layers of epithelium that are mostly one cell thick. Cnidarians are also some of the only animals that can reproduce both sexually and asexually.
Corals are colonial marine invertebrates within the class Anthozoa of the phylum Cnidaria. They typically form compact colonies of many identical individual polyps. Coral species include the important reef builders that inhabit tropical oceans and secrete calcium carbonate to form a hard skeleton.
A coral reef is an underwater ecosystem characterized by reef-building corals. Reefs are formed of colonies of coral polyps held together by calcium carbonate. Most coral reefs are built from stony corals, whose polyps cluster in groups.
The green fluorescent protein (GFP) is a protein that exhibits green fluorescence when exposed to light in the blue to ultraviolet range. The label GFP traditionally refers to the protein first isolated from the jellyfish Aequorea victoria and is sometimes called avGFP. However, GFPs have been found in other organisms including corals, sea anemones, zoanithids, copepods and lancelets.
Luciferase is a generic term for the class of oxidative enzymes that produce bioluminescence, and is usually distinguished from a photoprotein. The name was first used by Raphaël Dubois who invented the words luciferin and luciferase, for the substrate and enzyme, respectively. Both words are derived from the Latin word lucifer, meaning "lightbearer", which in turn is derived from the Latin words for "light" (lux) and "to bring or carry" (ferre).
Anthozoa is a class of marine invertebrates which includes the sea anemones, stony corals and soft corals. Adult anthozoans are almost all attached to the seabed, while their larvae can disperse as part of the plankton. The basic unit of the adult is the polyp; this consists of a cylindrical column topped by a disc with a central mouth surrounded by tentacles. Sea anemones are mostly solitary, but the majority of corals are colonial, being formed by the budding of new polyps from an original, founding individual. Colonies are strengthened by calcium carbonate and other materials and take various massive, plate-like, bushy or leafy forms.
Sea pens are colonial marine cnidarians belonging to the order Pennatulacea. The order Pennatulacea, commonly known as sea pens, are colony-forming benthos belonging within subclass Octocorallia. Sea pens are found worldwide from shallow to deep waters, and they are important components in sandy and muddy environments. Thus far, there has been only one molecular study focusing on the phylogenetic relationships within the order Pennatulacea, which mainly treated deep-sea species, and thus information on shallow water species is still lacking. There are 14 families within the order and 35 extant genera; it is estimated that of 450 described species, around 200 are valid. Sea pens have a cosmopolitan distribution, being found in tropical and temperate waters worldwide, as well as from the intertidal to depths of more than 6100 m. Sea pens are grouped with the octocorals, together with sea whips (gorgonians).
Antipatharians, also known as black corals or thorn corals, are an order of soft deep-water corals. These corals can be recognized by their jet-black or dark brown chitin skeletons, which are surrounded by their colored polyps. Antipatharians are a cosmopolitan order, existing in nearly every oceanic location and depth, with the sole exception of brackish waters. However, they are most frequently found on continental slopes under 50 m (164 ft) deep. A black coral reproduces both sexually and asexually throughout its lifetime. Many black corals provide housing, shelter, food, and protection for other animals.
The lancelets, also known as amphioxi, consist of some 30 to 35 species of "fish-like" benthic filter feeding chordates in the subphylum Cephalochordata, class Leptocardii, and family Branchiostomatidae.
Lophelia pertusa, the only species in the genus Lophelia, is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although L. pertusa reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction.
Medusozoa is a clade in the phylum Cnidaria, and is often considered a subphylum. It includes the classes Hydrozoa, Scyphozoa, Staurozoa and Cubozoa, and possibly the parasitic Polypodiozoa. Medusozoans are distinguished by having a medusa stage in their often complex life cycle, a medusa typically being an umbrella-shaped body with stinging tentacles around the edge. With the exception of some Hydrozoa, all are called jellyfish in their free-swimming medusa phase.
The Staghorn coral is a branching, stony coral, within the Order Scleractinia. It is characterized by thick, upright branches which can grow in excess of 2 meters in height and resemble the antlers of a stag, hence the name, Staghorn. It grows within various areas of a reef but is most commonly found within shallow fore and back reefs, as well as patch reefs, where water depths rarely exceed 20 meters. Staghorn corals can exhibit very fast growth, adding up to 5 cm in new skeleton for every 1 cm of existing skeleton each year, making them one of the fastest growing fringe coral species in the Western Atlantic. Due to this fast growth, Acropora cervicornis, serve as one of the most important reef building corals, functioning as marine nurseries for juvenile fish, buffer zones for erosion and storms, and center points of biodiversity in the Western Atlantic.
Hydroidolina is a subclass of Hydrozoa and makes up 90% of the class. Controversy surrounds who the sister groups of Hydroidolina are, but research has shown that three orders remain consistent as direct relatives: Siphonophorae, Anthoathecata, and Leptothecata.
Coelenterazine is a luciferin, a molecule that emits light after reaction with oxygen, found in many aquatic organisms across eight phyla. It is the substrate of many luciferases such as Renilla reniformis luciferase (Rluc), Gaussia luciferase (Gluc), and photoproteins, including aequorin, and obelin. All these proteins catalyze the oxidation of this substance, a reaction catalogued EC 1.13.12.5.
Primnoa(Lamororux, 1812) also known as red tree coral, is a genus of soft corals and the type genus of the family Primnoidae (Milne Edwards, 1857). They are sessile, benthic cnidarians that can be found in the North Pacific, North Atlantic, and Subantarctic South Pacific, and its members often play a vital ecological role as keystone species within their environment as a habitat and refuge for the megafauna that also inhabit those regions. This, in combination with their slow growth, makes the increasing disturbance to their habitats caused by fishing activities particularly impactful and difficult to recover from.
Astrangia poculata, the northern star coral or northern cup coral, is a species of non-reefbuilding stony coral in the family Rhizangiidae. It is native to shallow water in the western Atlantic Ocean and the Caribbean Sea. It is also found on the western coast of Africa. The International Union for Conservation of Nature lists this coral as being of "least concern". Astrangia poculata is an emerging model organism for corals because it harbors a facultative photosymbiosis, is a calcifying coral, and has a large geographic range. Research on this emerging model system is showcased annually by the Astrangia Research Working Group, collaboratively hosted by Roger Williams University, Boston University, and Southern Connecticut State University
Favites pentagona is a species of stony coral in the family Merulinidae, sometimes known as larger star coral. It is native to the Indo-Pacific region and its range extends from the Red Sea through the Indian Ocean to the Western Pacific Ocean. This is a common species throughout its wide range and the International Union for Conservation of Nature has rated its conservation status as being of "least concern".
Plumapathes pennacea is a species of black coral in the order Antipatharia. It is found in the tropical Indian, Pacific and Atlantic Oceans in deep reef habitats where it forms part of a biologically diverse community.
Renilla muelleri is a species of sea pansy. It has been reported from the Gulf Coast of the United States, notably the Florida panhandle, but is also reported from the eastern coast of South America. It is thought to be a euryhaline littoral species, found to a depth of up to 150 meters.
Clytia hemisphaerica is a small hydrozoan-group cnidarian, about 1 cm in diameter, that is found in the Mediterranean Sea and the North-East Atlantic Ocean. Clytia has the free-swimming jellyfish form typical of the Hydrozoa, as well as vegetatively propagating polyps.
