Spin label

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EPR spectrum of a spin label Epr spectrum.jpg
EPR spectrum of a spin label

A spin label (SL) is an organic molecule which possesses an unpaired electron, usually on a nitrogen atom, and the ability to bind to another molecule. Spin labels are normally used as tools for probing proteins or biological membrane-local dynamics using electron paramagnetic resonance spectroscopy. The site-directed spin labeling (SDSL) technique allows one to monitor a specific region within a protein. In protein structure examinations, amino acid-specific SLs can be used.

Contents

The goal of spin labeling is somewhat similar to that of isotopic substitution in NMR spectroscopy. There one replaces an atom lacking a nuclear spin (and so is NMR-silent) with an isotope having a spin I ≠ 0 (and so is NMR-active). This technique is useful for tracking the chemical environment around an atom when full substitution with an NMR-active isotope is not feasible. Recently, spin-labelling has also been used to probe chemical local environment in NMR itself, in a technique known as Paramagnetic Relaxation Enhancement (PRE).

Recent developments in the theory and experimental measurement of PREs have enabled the detection, characterization and visualization of sparsely populated states of proteins and their complexes. [1] Such states, which are invisible to conventional biophysical and structural techniques, play a key role in many biological processes including molecular recognition, allostery, macromolecular assembly and aggregation.

Applications of spin EPR

Spin labelled fatty acids have been extensively used to understand dynamic organization of lipids in bio-membranes and membrane biophysics. For example, stearic acid labelled with aminoxyl spin label moiety at various carbons (5, 7, 9, 12, 13, 14 and 16) with respect to first carbon of carbonyl group have been used to study the flexibility gradient of membrane lipids to understand membrane fluidity conditions at different depths of their lipid bilayer organization. [2]

See also

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Lamellar phase

Lamellar phase refers generally to packing of polar-headed long chain nonpolar-tail molecules in an environment of bulk polar liquid, as sheets of bilayers separated by bulk liquid. In biophysics, polar lipids pack as a liquid crystalline bilayer, with hydrophobic fatty acyl long chains directed inwardly and polar headgroups of lipids aligned on the outside in contact with water, as a 2-dimensional flat sheet surface. Under transmission electron microscope (TEM), after staining with polar headgroup reactive chemical osmium tetroxide, lamellar lipid phase appears as two thin parallel dark staining lines/sheets, constituted by aligned polar headgroups of lipids. 'Sandwiched' between these two parallel lines, there exists one thicker line/sheet of non-staining closely packed layer of long lipid fatty acyl chains. This TEM-appearance became famous as Robertson's unit membrane - the basis of all biological membranes, and structure of lipid bilayer in unilamellar liposomes. In multilamellar liposomes, many such lipid bilayer sheets are layered concentrically with water layers in between.

References

  1. Clore GM; Iwahara J (2009). "Theory, practice and applications of paramagnetic relaxation enhancement for the characterization of low-population states of biological macromolecules and their complexes". Chemical Reviews. 109 (9): 4108–4139. doi:10.1021/cr900033p. PMC   2825090 . PMID   19522502.
  2. Yashroy, R. C. (1990). "Magnetic resonance studies of dynamic organisation of lipids in chloroplast membranes". Journal of Biosciences. 15 (4): 281–288. doi:10.1007/BF02702669. ISSN   0250-5991.