TCAIM

TCAIM
Identifiers
Aliases	TCAIM , C3orf23, TOAG-1, TOAG1, T-cell activation inhibitor, mitochondrial, T cell activation inhibitor, mitochondrial
External IDs	MGI: 1196217 HomoloGene: 45481 GeneCards: TCAIM
Gene location (Human)
Chr.	Chromosome 3 (human)
End	44,409,451 bp
Gene location (Mouse)
Chr.	Chromosome 9 (mouse)
End	122,665,399 bp
RNA expression pattern
	Top expressed in
	right lobe of liver; ; islet of Langerhans; ; gastrocnemius muscle; ; ganglionic eminence; ; deltoid muscle; ; secondary oocyte; ; tibialis anterior muscle; ; smooth muscle tissue; ; Achilles tendon; ; monocyte;
	Top expressed in
	interventricular septum; ; temporal muscle; ; digastric muscle; ; secondary oocyte; ; myocardium of ventricle; ; extraocular muscle; ; soleus muscle; ; sternocleidomastoid muscle; ; tibialis anterior muscle; ; vastus lateralis muscle;
	More reference expression data
	n/a
Orthologs
	285343
	382117
	ENSG00000179152
	ENSMUSG00000046603
	Q8N3R3
	Q66JZ4
NM_001029839 ; NM_001029840 ; NM_001282913 ; NM_001282914 ; NM_001282915 ;
	NM_173826
	NM_001013405
NP_001025010 ; NP_001025011 ; NP_001269842 ; NP_001269843 ; NP_001269844 ;
	NP_776187
	NP_001013423
	Wikidata
View/Edit Human	View/Edit Mouse

Last updated February 15, 2024

TCAIM is a protein that in humans is encoded by the TCAIM gene ^[5]^[6] (T-cell activation inhibitor, mitochondrial).

Gene

The gene is located on chromosome 3, at position 3p21.31, and is 71,333 bases long. A graphic of the image is show below in Fig.1.2 The TCAIM protein is 496 residues long and weighs 57925 Da. It exists in four different isoforms. TCAIM is highly conserved among different species, but no homologies to protein families of known functions were discovered.^[7]

Transcript

There are 8 alternatively spliced exons, which encode 4 transcript variants. The primary transcript, which is 3520 bp, is well conserved among orthologs, with the human isoform 1 having high identity with orthologous proteins. The X1 transcript contains 11 exons, which yield a polypeptide that is 496 amino acid residues in length.^[8]

Genomic context illustration Genomic Context illustration for C3orf23. This segment depicts approximately 1,500,000 base pairs of chromosome 3. The red diamonds with the green lines depict the start of transcription. C3orf23 is transcribed in the same direction as the upstream gene while it is transcribed in an opposite to the downstream gene. THAHAHAHAHA.png — Genomic context illustration Genomic Context illustration for C3orf23. This segment depicts approximately 1,500,000 base pairs of chromosome 3. The red diamonds with the green lines depict the start of transcription. C3orf23 is transcribed in the same direction as the upstream gene while it is transcribed in an opposite to the downstream gene.

Protein

General properties

Property	Pre-Protein	Cleaved Protein	Mature Protein
Amino Acid Length	496	470	470
Isoelectric Point	8.7	8.5	8.2-8.6
Molecular Weight	58 kdal	55 kdal	~55-57

The isoelectric point is significantly greater than average for human proteins (6.81).^[9]

Structure

Shown to the right is a predicted tertiary structure of the protein. It is composed mostly of long alpha-helices with several coil regions and strands dispersed throughout the length of the protein. The ends of the protein consist of coil regions opposite the N- and C- terminal ends.

Expression

TCAIM is moderately expressed (50-75%) in most tissues in the body.^[11] However, a study on NCBI GEO discussing the effect of disease states on TCAIM mRNA expression found that protein expression was actually elevated in HPV positive tissues compared to the HPV negative tissues. Another study found that TCAIM expression was elevated in individuals with Type 2 diabetes and insulin resistance. The expression of TCAIM seems to be contingent on the specific disease state in a variety of cases.^[12]

Subcellular localization

The protein contains a mitochondrial signal peptide localizing it to the mitochondrial matrix.^[13] Analysis via the EXPASY localization software^[14] confirmed this finding. The high isoelectric point of the Human protein provides further evidence for the mitochondrial localization due to the high pH of the mitochondrial matrix.

Post-translational modifications

Cleavage sites

The protein is initially cleaved to remove the 26 amino acids from the N-terminus. This represents a signal peptide after it is localized to the mitochondrion.^[13]

Phosphorylation

There are a number of predicted phosphorylation sites, as see in the figure to the right. Serine residues are more likely to undergo phosphorylation than threonine or tyrosine residues.

O-linked glycosylation

Shown to the right are a number of predicted o-linked sites. None have been experimentally determined thus far.^{[ when? ]}

Homology and Evolution

Homologs

An alignment of Homo sapiens TCAIM and Danio rerio (Zebrafish) homologs was performed using the SDSC workbench. There is approximately 55% identity between the two orthologs, with a global alignment score of 1817. The two orthologs are consistently similar throughout the entirety of their sequences. The differences between the two genes is due seemingly random segments of non-conserved and semiconserved residues scattered throughout the two alignments. This difference may be due to the non-relatedness between the two organisms.^[17]

Evolutionary history

TCAIM diverged much quicker than cytochrome C, but slightly slower than fibrinogen.^[18]

Function

Not much is known about the function; it is surmised that this protein may play a role in apoptosis of T-cells. TCAIM may play a role in the innate immune signaling via the mitochondria.^[19]

Clinical significance

A research study was performed by Vogel et al. They previously found that TCAIM is highly expressed in grafts and tissues of tolerance-developing transplant patients and that the protein is localized in the mitochondria. In this study, they found that TCAIM interacts with and is regulated by CD11c(+) dendritic cells.^[19] Another article by Hendrikson et. el briefly mentions TCAIM. They found that genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.^[7] The third article is another research that finds evidence that TCAIM (along with mitochondrial genes) could be used as a marker in patients to predict whether they could accept an allograft or reject it.^[20]

Related Research Articles

Mitochondrial 5-demethoxyubiquinone hydroxylase, also known as coenzyme Q7, hydroxylase, is an enzyme that in humans is encoded by the COQ7 gene. The clk-1 (clock-1) gene encodes this protein that is necessary for ubiquinone biosynthesis in the worm Caenorhabditis elegans and other eukaryotes. The mouse version of the gene is called mclk-1 and the human, fruit fly and yeast homolog COQ7.

Chloride intracellular channel 4, also known as CLIC4,p644H1,HuH1, is a eukaryotic gene.

Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial is an enzyme that in humans is encoded by the IDH3G gene.

Transmembrane protein 50A is a protein that in humans is encoded by the TMEM50A gene.

Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial is an enzyme that in humans is encoded by the IDH3B gene.

DGLUCY is a protein that in humans is encoded by the DGLUCY gene.

28S ribosomal protein L42, mitochondrial is a protein that in humans is encoded by the MRPL42 gene.

39S ribosomal protein L15, mitochondrial is a protein that in humans is encoded by the MRPL15 gene.

39S ribosomal protein L12, mitochondrial is a protein that in humans is encoded by the MRPL12 gene.

Transmembrane and ubiquitin-like domain-containing protein 2 is a protein that in humans is encoded by the TMUB2 gene.

Neuroblastoma breakpoint family, member 3, also known as NBPF3, is a human gene of the neuroblastoma breakpoint family, which resides on chromosome 1 of the human genome. NBPF3 is located at 1p36.12, immediately upstream of genes ALPL and RAP1GAP.

Mitochondrial carrier homolog 1 (MTCH1), also referred to as presenilin 1-associated protein (PSAP), is a protein that in humans is encoded by the MTCH1 gene on chromosome 6. MTCH1 is a proapoptotic mitochondrial protein potentially involved in Alzheimer’s disease (AD).

Adenylate kinase isoenzyme 4, mitochondrial is an enzyme that in humans is encoded by the AK4 gene.

Transmembrane protein 222 is a protein that in humans is encoded by the TMEM222 gene. One notable feature of the protein encoded by this gene is the presence of three predicted transmembrane domains. The TMEM222 protein is predicted to most likely localize to the secretory vesicles.

Cytochrome c oxidase subunit 7A-related protein, mitochondrial is an enzyme that in humans is encoded by the COX7A2L gene.

Uncharacterized protein C1orf21, also known as Proliferation-Inducing Protein 13, is a protein that in humans is encoded by the C1orf21 gene. C1orf21 is an intracellular protein that flows between the nucleus and the cytoplasm in the cell. It has been linked with cell growth and reproduction and there has been strong links with various types of cancers. There are no paralogs for this gene, however, many conserved orthologs have been found in all invertebrates. C1orf21 has low to moderate level of expression in most tissues in humans, however, it has the most expression in the skin, lung and prostate.

Chromosome 11 open reading frame one, also known as C11orf1, is a protein-coding gene. It has been found by yeast two hybrid screen to bind to SETDB1 a histone protein methyltransferase enzyme. SETDB1 has been implicated in Huntington's disease, a neurodegenerative disorder.

MORN1 containing repeat 1, also known as Morn1, is a protein that in humans is encoded by the MORN1 gene.

Centrosomal protein of 152 kDa, also known as Cep152, is a protein that in humans is encoded by the CEP152 gene. It is the ortholog of the Drosophila melanogaster gene asterless (asl) and both are required for centriole duplication.

Coiled-coil domain containing 60 is a protein that in humans is encoded by the CCDC60 gene that is most highly expressed in the trachea, salivary glands, bladder, cervix, and epididymis.

References

1 2 3 GRCh38: Ensembl release 89: ENSG00000179152 - Ensembl, May 2017
1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000046603 - Ensembl, May 2017
↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
↑ Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA (Dec 2002). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc Natl Acad Sci U S A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC 139241 . PMID 12477932.
↑ "Entrez Gene: C3orf23 chromosome 3 open reading frame 23".
1 2 Hendrickson SL, Lautenberger JA, Chinn LW, Malasky M, Sezgin E, Kingsley LA, Goedert JJ, Kirk GD, Gomperts ED, Buchbinder SP, Troyer JL, O'Brien SJ (2010). "Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression". PLOS ONE. 5 (9): e12862. Bibcode:2010PLoSO...512862H. doi: 10.1371/journal.pone.0012862 . PMC 2943476 . PMID 20877624.
↑ "TCAIM T cell activation inhibitor, mitochondrial [Homo sapiens (human)] - Gene - NCBI".
↑ Kozlowski, Lukasz P. "Proteome-pI - Proteome Isoelectric Point Database statistics". isoelectricpointdb.org. Retrieved 2017-04-30.
↑ J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang. The I-TASSER Suite: Protein structure and function prediction. Nature Methods, 12: 7-8, 2015.
1 2 Uhlén M et al, 2015. Tissue-based map of the human proteome. Science PubMed: 25613900 DOI: 10.1126/science.1260419
↑ "GDS161 / RC_N95260_at".
1 2 "TCAIM Gene - GeneCards | TCAIM Protein | TCAIM Antibody".
↑ "ExPASy: SIB Bioinformatics Resource Portal - Categories".
↑ Zexian Liu, Yongbo Wang, Han Cheng, Wankun Deng, Zhicheng Pan, Shahid Ullah, Jian Ren and Yu Xue. 2015, Submitted
↑ Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology. Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Bennett EP, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H. EMBO J, 32(10):1478-88, May 15, 2013. (doi: 10.1038/emboj.2013.79. Epub 2013 Apr 12)
↑ Myers EW, Miller W (1988). "Optimal alignments in linear space". Computer Applications in the Biosciences. 4 (1): 11–7. CiteSeerX 10.1.1.107.6989 . doi:10.1093/bioinformatics/4.1.11. PMID 3382986.
↑ "UCSC Genome Browser Home".
1 2 Vogel SZ, Schlickeiser S, Jürchott K, Akyuez L, Schumann J, Appelt C, Vogt K, Schröder M, Vaeth M, Berberich-Siebelt F, Lutz MB, Grütz G, Sawitzki B (2015). "TCAIM decreases T cell priming capacity of dendritic cells by inhibiting TLR-induced Ca2+ influx and IL-2 production" (PDF). Journal of Immunology. 194 (7): 3136–46. doi: 10.4049/jimmunol.1400713 . PMID 25750433.
↑ Sawitzki B, Bushell A, Steger U, Jones N, Risch K, Siepert A, Lehmann M, Schmitt-Knosalla I, Vogt K, Gebuhr I, Wood K, Volk HD (2007). "Identification of gene markers for the prediction of allograft rejection or permanent acceptance". American Journal of Transplantation. 7 (5): 1091–102. doi: 10.1111/j.1600-6143.2007.01768.x . PMID 17456197. S2CID 20348485.

External links

Human TCAIM genome location and TCAIM gene details page in the UCSC Genome Browser .