Archaeoglobaceae

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Archaeoglobaceae
1ytu argonaute dsrna.png
The PIWI domain of an argonaute protein from A. fulgidus , bound to a short double-stranded RNA fragment and illustrating the base-pairing and aromatic stacking stabilization of the bound conformation.
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Archaea
Kingdom: Euryarchaeota
Class: Archaeoglobi
Order: Archaeoglobales
Family: Archaeoglobaceae
Huber and Stetter 2002
Genera
Synonyms
  • "Archaeoglobaceae" Stetter 1989

Archaeoglobaceae are a family of the Archaeoglobales. [1] All known genera within the Archaeoglobaceae are hyperthermophilic and can be found near undersea hydrothermal vents. Archaeoglobaceae are the only family in the order Archaeoglobales, which is the only order in the class Archaeoglobi.

Contents

Mode of metabolism

While all genera within the Archaeoglobaceae are related to each other phylogenetically, the mode of metabolism used by each of these organisms is unique. Archaeoglobus are chemoorganotrophic sulfate-reducing archaea, the only known member of the Archaea that possesses this type of metabolism. Ferroglobus , in contrast, are chemolithotrophic organisms that couple the oxidation of ferrous iron to the reduction of nitrate. Geoglobus are iron reducing-archaea that use hydrogen gas or organic compounds as energy sources. [2]

Characteristic and genera

Archaeoglobaceae have three genera and here are some brief differences between them:

living environments

Archaeoglobus species are found in a variety of extreme environments, including deep-sea hydrothermal vents, oil reservoirs, and hot springs. These environments are characterized by high temperatures, high pressures, and low oxygen concentrations, which make them inhospitable to most other forms of life (Topçuoğlu et al 2019). [4] They are able to thrive in these environments by using a variety of metabolic pathways to obtain energy, and by producing a range of heat-shock proteins and other stress-response mechanisms that help them to survive in these extreme conditions. They are extremophiles, which means they can also be found in environments that are high in salt content, such as in salt flats or Salt Lake. Archaeoglobaceae are able to thrive in these extreme environments because they are able to use a variety of different minerals and gases to make energy. For example, some species of Archaeoglobaceae are able to use sulfur in a process called dissimilatory sulfate reduction, which allows them to produce energy without the need for oxygen. Other species of Archaeoglobaceae are able to use carbon dioxide or hydrogen gas as a source of energy(Topçuoğlu et al 2019). [4]

In addition to their ability to use different energy sources, some species of Archaeoglobaceae are also known to form symbiotic relationships with other organisms. For example, some species of Archaeoglobaceae have been found living in association with tube worms, which are able to extract nutrients from the hydrothermal vent environment and provide them to the bacteria in exchange for energy. These symbiotic relationships are thought to be important for the survival of both the bacteria and the tube worms in these extreme environments(Topçuoğlu et al 2019). [4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [5] and National Center for Biotechnology Information (NCBI). [1]

16S rRNA based LTP_06_2022 [6] [7] [8] 53 marker proteins based GTDB 08-RS214 [9] [10] [11]
Archaeoglobus

Archaeoglobus infectus Mori et al. 2008

Archaeoglobus sulfaticallidus Steinsbu et al. 2010

speciesgroup 2
Geoglobus

G. acetivorans Slobodkina et al. 2009

G. ahangari Kashefi et al. 2002

Archaeoglobus

A. fulgidus Stetter 1988 (type sp.)

A. neptunius Slobodkina et al. 2021

A. veneficus Huber et al. 1998

Ferroglobus placidus Hafenbradl et al. 1997

A. profundus Burggraf et al. 1990

Ferroglobus placidus

Geoglobus

G. acetivorans

G. ahangari

Archaeoglobus

A.profundus

A. fulgidus

A. neptunius

A. veneficus

A. sulfaticallidus

See also

Related Research Articles

<span class="mw-page-title-main">Thermophile</span> Organism that thrives at relatively high temperatures

A thermophile is an organism—a type of extremophile—that thrives at relatively high temperatures, between 41 and 122 °C. Many thermophiles are archaea, though some of them are bacteria and fungi. Thermophilic eubacteria are suggested to have been among the earliest bacteria.

The Aquificota phylum is a diverse collection of bacteria that live in harsh environmental settings. The name Aquificota was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.

A hyperthermophile is an organism that thrives in extremely hot environments—from 60 °C (140 °F) upwards. An optimal temperature for the existence of hyperthermophiles is often above 80 °C (176 °F). Hyperthermophiles are often within the domain Archaea, although some bacteria are also able to tolerate extreme temperatures. Some of these bacteria are able to live at temperatures greater than 100 °C, deep in the ocean where high pressures increase the boiling point of water. Many hyperthermophiles are also able to withstand other environmental extremes, such as high acidity or high radiation levels. Hyperthermophiles are a subset of extremophiles. Their existence may support the possibility of extraterrestrial life, showing that life can thrive in environmental extremes.

<span class="mw-page-title-main">Karl Stetter</span> German microbiologist

Karl Otto Stetter is a German microbiologist and authority on astrobiology. Stetter is an expert on microbial life at high temperatures.

Archaeoglobus is a genus of the phylum Euryarchaeota. Archaeoglobus can be found in high-temperature oil fields where they may contribute to oil field souring.

Ferroglobus is a genus of the Archaeoglobaceae.

The Thermotogota are a phylum of the domain Bacteria. The phylum contains a single class, Thermotogae. The phylum Thermotogota is composed of Gram-negative staining, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.

The Aquificaceae family are bacteria that live in harsh environmental settings such as hot springs, sulfur pools, and hydrothermal vents. Although they are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea, Aquificaceae genera are an early phylogenetic branch.

Aquifex pyrophilus is a gram-negative, non-spore forming, rod-shaped bacteria. It is one of a handful of species in the Aquificota phylum, which are a group of thermophilic bacteria that are found near underwater volcanoes or hot springs.

<span class="mw-page-title-main">Sulfur-reducing bacteria</span> Microorganisms able to reduce elemental sulfur to hydrogen sulfide

Sulfur-reducing bacteria are microorganisms able to reduce elemental sulfur (S0) to hydrogen sulfide (H2S). These microbes use inorganic sulfur compounds as electron acceptors to sustain several activities such as respiration, conserving energy and growth, in absence of oxygen. The final product of these processes, sulfide, has a considerable influence on the chemistry of the environment and, in addition, is used as electron donor for a large variety of microbial metabolisms. Several types of bacteria and many non-methanogenic archaea can reduce sulfur. Microbial sulfur reduction was already shown in early studies, which highlighted the first proof of S0 reduction in a vibrioid bacterium from mud, with sulfur as electron acceptor and H
2
as electron donor. The first pure cultured species of sulfur-reducing bacteria, Desulfuromonas acetoxidans, was discovered in 1976 and described by Pfennig Norbert and Biebel Hanno as an anaerobic sulfur-reducing and acetate-oxidizing bacterium, not able to reduce sulfate. Only few taxa are true sulfur-reducing bacteria, using sulfur reduction as the only or main catabolic reaction. Normally, they couple this reaction with the oxidation of acetate, succinate or other organic compounds. In general, sulfate-reducing bacteria are able to use both sulfate and elemental sulfur as electron acceptors. Thanks to its abundancy and thermodynamic stability, sulfate is the most studied electron acceptor for anaerobic respiration that involves sulfur compounds. Elemental sulfur, however, is very abundant and important, especially in deep-sea hydrothermal vents, hot springs and other extreme environments, making its isolation more difficult. Some bacteria – such as Proteus, Campylobacter, Pseudomonas and Salmonella – have the ability to reduce sulfur, but can also use oxygen and other terminal electron acceptors.

<i>Thermotoga</i> Genus of bacteria

Thermotoga is a genus of the phylum Thermotogota. Members of Thermotoga are hyperthermophilic bacteria whose cell is wrapped in a unique sheath-like outer membrane, called a "toga".

Geoglobus is a hyperthermophilic member of the Archaeoglobaceae within the Euryarchaeota. It consists of two species, the first, G. ahangari, isolated from the Guaymas Basin hydrothermal system located deep within the Gulf of California. As a hyperthermophile, it grows best at a temperature of 88 °C and cannot grow at temperatures below 65 °C or above 90 °C. It possess an S-layer cell wall and a single flagellum. G. ahangari is an anaerobe, using poorly soluble ferric iron (Fe3+) as a terminal electron acceptor. It can grow either autotrophically using hydrogen gas (H2) or heterotrophically using a large number of organic compounds, including several types of fatty acids, as energy sources. G. ahangari was the first archaeon isolated capable of using hydrogen gas coupled to iron reduction as an energy source and the first anaerobe isolated capable of using long-chain fatty acids as an energy source.

<i>Ignicoccus</i> Genus of archaea

Ignicoccus is a genus of hyperthermophillic Archaea living in marine hydrothermal vents. They were discovered in samples taken at the Kolbeinsey Ridge north of Iceland, as well as at the East Pacific Rise in 2000.

Methanococcus is a genus of coccoid methanogens of the family Methanococcaceae. They are all mesophiles, except the thermophilic M. thermolithotrophicus and the hyperthermophilic M. jannaschii. The latter was discovered at the base of a “white smoker” chimney at 21°N on the East Pacific Rise and it was the first archaeal genome to be completely sequenced, revealing many novel and eukaryote-like elements.

<span class="mw-page-title-main">Desulfurococcales</span> Order of archaea

The Desulfurococcales is an order of the Thermoprotei, part of the kingdom Archaea. The order encompasses some genera which are all thermophilic, autotrophs which utilise chemical energy, typically by reducing sulfur compounds using hydrogen. Desulfurococcales cells are either regular or irregular coccus in shape, with forms of either discs or dishes. These cells can be single, in pairs, in short chains, or in aciniform formation.

Methanocaldococcus formerly known as Methanococcus is a genus of coccoid methanogen archaea. They are all mesophiles, except the thermophilic M. thermolithotrophicus and the hyperthermophilic M. jannaschii. The latter was discovered at the base of a “white smoker” chimney at 21°N on the East Pacific Rise and it was the first archaean genome to be completely sequenced, revealing many novel and eukaryote-like elements.

<i>Pyrococcus</i> Genus of archaea

Pyrococcus is a genus of Thermococcaceaen archaean.

In taxonomy, Thermococcus is a genus of thermophilic Archaea in the family the Thermococcaceae.

Pyrodictium is a genus in the family Pyrodictiaceae. It is a genus of submarine hyperthermophilic Archaea whose optimal growth temperature range is 80 to 105 °C. They have a unique cell structure involving a network of cannulae and flat, disk-shaped cells. Pyrodictium are found in the porous walls of deep-sea vents where the temperatures inside get as high as 400 °C, while the outside marine environment is typically 3 °C. Pyrodictium is apparently able to adapt morphologically to this type of hot–cold habitat.

<span class="mw-page-title-main">Hydrothermal vent microbial communities</span> Undersea unicellular organisms

The hydrothermal vent microbial community includes all unicellular organisms that live and reproduce in a chemically distinct area around hydrothermal vents. These include organisms in the microbial mat, free floating cells, or bacteria in an endosymbiotic relationship with animals. Chemolithoautotrophic bacteria derive nutrients and energy from the geological activity at Hydrothermal vents to fix carbon into organic forms. Viruses are also a part of the hydrothermal vent microbial community and their influence on the microbial ecology in these ecosystems is a burgeoning field of research.

References

  1. 1 2 Sayers; et al. "Archaeoglobaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-06-05.
  2. Madigan, M.T. & Martinko, J.M. (2005). Brock Biology of Microorganisms (11th ed.). Pearson Prentice Hall.
  3. 1 2 3 Brileya, Kristen; Reysenbach, Anna-Louise (2014). "The Class Archaeoglobi". The Prokaryotes. pp. 15–23. doi:10.1007/978-3-642-38954-2_323. ISBN   978-3-642-38953-5.
  4. 1 2 3 "Archaeoglobales - an overview | ScienceDirect Topics". www.sciencedirect.com. Retrieved 2023-04-27.
  5. J.P. Euzéby. "Archaeoglobaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-11-17.
  6. "The LTP" . Retrieved 10 May 2023.
  7. "LTP_all tree in newick format" . Retrieved 10 May 2023.
  8. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  9. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  10. "ar53_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  11. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.

Further reading

Bibliography