Carnegie Mellon University Computational Biology Department

Last updated
Ray and Stephanie Lane Computational Biology Department
Computational Biology Department Logo.jpg
Type Private
Established2007 (as Lane Center for Computational Biology)
Location
Campus Urban
Website http://www.cbd.cmu.edu/

The Ray and Stephanie Lane Computational Biology Department (CBD) is one of the seven departments within the School of Computer Science at Carnegie Mellon University in Pittsburgh, Pennsylvania, United States. Now situated in the Gates-Hillman Center, CBD was established in 2007 as the Lane Center for Computational Biology by founding department head Robert F. Murphy. The establishment was supported by funding from Raymond J. Lane and Stephanie Lane, [1] CBD officially became a department within the School of Computer Science in 2009. [2] In November 2023, Carnegie Mellon named the department as the Ray and Stephanie Lane Computational Biology Department, in recognition of the Lanes' significant investment in computational biology at CMU. [3]

Contents

CBD specializes in genomics, systems biology, and biological imaging, pioneering advanced computational methods, including AI and machine learning. The accolades of its faculty (current and former) include leadership roles such as president of the National Science Foundation [4] and the International Society of Advanced Cytometry, [5] and as membership in the National Institutes of Health Council of Councils. [6] They have received numerous prestigious awards, including the Overton Prize, [7] Guggenheim Fellowship, [8] Okawa Award, United States Air Force Young Investigator Award, Presidential Young Investigator Award, NSF CAREER Award, Sloan Fellowship, and New Innovator's Award from the NIH, among others. Additionally, faculty members have been elected to the National Academy of Sciences, [9] American Association for the Advancement of Science, and the International Society of Computational Biology.

As part of the HHMI-NIBIB Interfaces Initiative, [10] CBD received funding from Howard Hughes Medical Institute [11] and the National Institute of Biomedical Imaging and Bioengineering (NIBIB) [12] to develop an interdisciplinary Ph.D. program in computational biology with the University of Pittsburgh, which was founded as the Joint CMU-Pitt Ph.D. Program in Computational Biology in 2005. This program is currently receiving training support through a National Institutes of Health T32 Training Grant. CBD is the home of the B.S. in Computational Biology, [13] one of the four B.S. degree programs within Carnegie Mellon School of Computer Science. The Computational Biology undergraduate program has been consistently ranked as one of the top 3 programs by US News. [14]

CBD is the home of an NIH Center for the HuBMAP Integration, Visualization & Engaging (HIVE) Initiative [15] led by Ziv Bar-Joseph and an NIH Center for Multiscale Analysis of 4D Nucleome Structure and Function by Comprehensive Multimodal Data Integration [16] led by Jian Ma.

Notable faculty

Degree programs

Related Research Articles

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<span class="mw-page-title-main">Manuela M. Veloso</span> Portuguese-American computer scientist

Manuela Maria Veloso is the Head of J.P. Morgan AI Research & Herbert A. Simon University Professor Emeritus in the School of Computer Science at Carnegie Mellon University, where she was previously Head of the Machine Learning Department. She served as president of Association for the Advancement of Artificial Intelligence (AAAI) until 2014, and the co-founder and a Past President of the RoboCup Federation. She is a fellow of AAAI, Institute of Electrical and Electronics Engineers (IEEE), American Association for the Advancement of Science (AAAS), and Association for Computing Machinery (ACM). She is an international expert in artificial intelligence and robotics.

Bin He is a Chinese American biomedical engineering scientist. He is the Trustee Professor of the Department of Biomedical Engineering, professor by courtesy in the Department of Electrical and Computer Engineering, and Professor of Neuroscience Institute, and was the head of the department of Biomedical Engineering at Carnegie Mellon University. Prior, he was Distinguished McKnight University Professor of Biomedical Engineering and Medtronic-Bakken Endowed Chair for Engineering in Medicine at the University of Minnesota. He previously served as the director of the Institute for Engineering in Medicine and the Center for Neuroengineering at the University of Minnesota. He was the Editor in Chief of the IEEE Transactions on Biomedical Engineering and serves as the editor in chief of IEEE Reviews in Biomedical Engineering. He was the president of the IEEE Engineering in Medicine & Biology Society (EMBS) from 2009 to 2010 and chair of International Academy of Medical and Biological Engineering from 2018 to 2021.

<span class="mw-page-title-main">Kathleen Carley</span> American social scientist

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<span class="mw-page-title-main">Robert F. Murphy (computational biologist)</span>

Robert F. Murphy is Ray and Stephanie Lane Professor of Computational Biology Emeritus and Director of the M.S. Program in Automated Science at Carnegie Mellon University. Prior to his retirement in May 2021, he was the Ray and Stephanie Lane Professor of Computational Biology as well as Professor of Biological Sciences, Biomedical Engineering, and Machine Learning. He was founding Director of the Center for Bioimage Informatics at Carnegie Mellon and founded the Joint CMU-Pitt Ph.D. Program in Computational Biology. He also founded the Computational Biology Department at Carnegie Mellon University and served as its head from 2009 to 2020.

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The Joint CMU-Pitt Ph.D Program in Computational Biology (CPCB) is an interdisciplinary graduate training program in computational biology. It is a joint program between Carnegie Mellon University and the University of Pittsburgh in Pittsburgh, Pennsylvania.

<span class="mw-page-title-main">Ziv Bar-Joseph</span> Israeli computational biologist

Ziv Bar-Joseph is an Israeli computational biologist and Professor in the Computational Biology Department and the Machine Learning Department at the Carnegie Mellon School of Computer Science.

<span class="mw-page-title-main">Eric Xing</span>

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Angel G. Jordan was a Spanish-born American electronics and computer engineer known as the founder of the Software Engineering Institute (SEI) and co-founder of the Robotics Institute at Carnegie Mellon University (CMU) and served on its faculty for 55 years, since 2003 as Emeritus. He was instrumental in the formation of the School of Computer Science (SCS) at Carnegie Mellon. He has made contributions to technology transfer and institutional development. He served as Dean of Carnegie Mellon College of Engineering and later as the provost of Carnegie Mellon University.

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<span class="mw-page-title-main">Jian Ma (computer scientist)</span> American computer scientist

Jian Ma is an American computer scientist and computational biologist. He is the Ray and Stephanie Lane Professor of Computational Biology in the School of Computer Science at Carnegie Mellon University. He is a faculty member in the Ray and Stephanie Lane Computational Biology Department. His lab develops machine learning algorithms to study the structure and function of the human genome and cellular organization and their implications for evolution, health and disease. During his Ph.D. and postdoc training, he developed algorithms to reconstruct the ancestral mammalian genome. His research group has recently pioneered a series of new machine learning methods for 3D epigenomics, comparative genomics, spatial genomics, and single-cell analysis. He received an NSF CAREER award in 2011. In 2020, he was awarded a Guggenheim Fellowship in Computer Science. He is an elected Fellow of the American Association for the Advancement of Science. He leads an NIH 4D Nucleome Center to develop machine learning algorithms to better understand the cell nucleus. He is the Program Chair for RECOMB 2024.

References

  1. "Department History".
  2. "Computational Biology Becomes Department In Carnegie Mellon's School of Computer Science". Carnegie Mellon School of Computer Science. Retrieved 2023-11-18.
  3. "Carnegie Mellon Trustee Ray Lane and Stephanie Lane Invest $25 Million in CMU's Computational Biology Department - News - Carnegie Mellon University". www.cmu.edu. 2023-11-06. Retrieved 2023-11-18.
  4. "Subra Suresh Biography". www.nsf.gov. Retrieved 2016-03-15.
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  7. "2012 Overton Prize: Ziv Bar-Joseph". www.iscb.org. Retrieved 2016-03-15.
  8. Carnegie Mellon. "Jian Ma Wins Guggenheim Fellowship - News - Carnegie Mellon University". Archived from the original on 2020-05-22.
  9. "Kathryn Roeder". www.nasonline.org. Retrieved 2023-11-18.
  10. "HHMI-NIBIB Interfaces Initiative". HHMI.org. Archived from the original on 2016-03-12. Retrieved 2016-03-14.
  11. "Institute News: HHMI Awards $10 Million for Interdisciplinary Graduate Education". HHMI.org. Retrieved 2016-03-14.
  12. "NIBIB Invests in Interdisciplinary Graduate Research Training". www.nibib.nih.gov. Retrieved 2016-03-14.
  13. "B.S. in Computational Biology | Computational Biology Department". Computational Biology Department | Carnegie Mellon University. Retrieved 2017-02-07.
  14. "Best Undergraduate Bioinformatics/Biotechnology Programs". Archived from the original on 2021-08-25.
  15. University, Carnegie Mellon. "Carnegie Mellon Will Help Build 3D Cellular Map of Human Body - News - Carnegie Mellon University". www.cmu.edu. Archived from the original on 2018-10-01. Retrieved 2021-07-31.
  16. University, Carnegie Mellon. "Carnegie Mellon Heads New Center for Studying Structure of Cell Nucleus - News - Carnegie Mellon University". www.cmu.edu. Archived from the original on 2020-10-23. Retrieved 2021-07-31.