Nanoarchaeota are a phylum of the Archaea. This phylum currently has only one representative, Nanoarchaeum equitans.
The Aquificae phylum is a diverse collection of bacteria that live in harsh environmental settings. The name 'Aquificae' was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.
The phylum Bacteroidetes is composed of three large classes of Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, and sea water, as well as in the guts and on the skin of animals. Bacteroidetes spp. are part of normal, healthy placental microbiome.
The Aurantimonadaceae are a small family of marine bacteria. Six species are known. Aurantimonas coralicida causes a white plague in corals. Fulvimarina pelagi was isolated from seawater, and takes the form of nonmotile rods.
In prokaryote nomenclature, Candidatus is a component of the taxonomic name for a bacterium or other prokaryote, that cannot be maintained in a microbiological culture collection. It is an interim taxonomic status for yet-to-be-cultured microorganisms. An example would be "Candidatus Phytoplasma allocasuarinae". This can be abbreviated to "Ca. Phytoplasma allocasuarinae". Candidatus status may be used when a species or genus is well characterized but yet-uncultured. With today's technology much information is obtained by 16S ribosomal RNA or even near-complete genomes with modern metagenomics techniques.
Halomonadaceae is a family of halophilic Proteobacteria.
In taxonomy, the Halobacteriaceae are a family of the Halobacteriales in the domain Archaea. Halobacteriaceae represent a large part of halophilic Archaea, along with members in two other methanogenic families, Methanosarcinaceae and Methanocalculaceae. The family consists of many diverse genera that can survive extreme environmental niches. Most commonly, Halobacteriaceae are found in hypersaline lakes and can even tolerate sites polluted by heavy metals. They include neutrophiles, acidophiles, alkaliphiles, and there have even been psychrotolerant species discovered. Some members have been known to live aerobically, as well as anaerobically, and they come in many different morphologies. These diverse morphologies include rods in genus Halobacterium, cocci in Halococcus, flattened discs or cups in Haloferax, and other shapes ranging from flattened triangles in Haloarcula to squares in Haloquadratum, and Natronorubrum. Most species of Halobacteriaceae are best known for their high salt tolerance and red-pink pigmented members(due to bacterioruberin carotenoids), but there are also non-pigmented species and those that require moderate salt conditions. Some species of Halobacteriaceae have been shown to exhibit phosphorus solubilizing activities that contribute to phosphorus cycling in hypersaline environments. Techniques such as 16S rRNA analysis and DNA-DNA hybridization have been major contributors to taxonomic classification in Halobacteriaceae, partly due to the difficulty in culturing halophilic Archaea.
A structural gene is a gene that codes for any RNA or protein product other than a regulatory factor. A term derived from the lac operon, structural genes are typically viewed as those containing sequences of DNA corresponding to the amino acids of a protein that will be produced, as long as said protein does not function to regulate gene expression. Structural gene products include enzymes and structural proteins. Also encoded by structural genes are non-coding RNAs, such as rRNAs and tRNAs.
Rubrobacter is a genus of Actinobacteria, given its own subclass (Rubrobacteridae). It is radiotolerant and may rival Deinococcus radiodurans in this regard.
Fibrobacteres is a small bacterial phylum which includes many of the major rumen bacteria, allowing for the degradation of plant-based cellulose in ruminant animals. Members of this phylum were categorized in other phyla. The genus Fibrobacter was removed from the genus Bacteroides in 1988.
Epsilonproteobacteria are a class of Proteobacteria. All species of this class are, like all Proteobacteria, Gram-negative.
Alphaproteobacteria is a class of bacteria in the phylum Proteobacteria. Its members are highly diverse and possess few commonalities, but nevertheless share a common ancestor. Like all Proteobacteria, its members are gram-negative and some of its intracellular parasitic members lack peptidoglycan and are consequently gram variable.
Sinorhizobium/Ensifer is a genus of nitrogen-fixing bacteria (rhizobia), three of which have been sequenced.
A ribosome binding site, or ribosomal binding site (RBS), is a sequence of nucleotides upstream of the start codon of an mRNA transcript that is responsible for the recruitment of a ribosome during the initiation of protein translation. Mostly, RBS refers to bacterial sequences, although internal ribosome entry sites (IRES) have been described in mRNAs of eukaryotic cells or viruses that infect eukaryotes. Ribosome recruitment in eukaryotes is generally mediated by the 5' cap present on eukaryotic mRNAs.
The International Journal of Systematic and Evolutionary Microbiology is a peer-reviewed scientific journal covering research in the field of microbial systematics that was established in 1951. Its scope covers the taxonomy, nomenclature, identification, characterisation, culture preservation, phylogeny, evolution, and biodiversity of all microorganisms, including prokaryotes, yeasts and yeast-like organisms, protozoa and algae. The journal is currently published monthly by the Microbiology Society.
The bacterial phyla are the major lineages, known as phyla or divisions, of the domain Bacteria.
Bacterial taxonomy is the taxonomy, i.e. the rank-based classification, of bacteria.
Armatimonadetes is a phylum of gram-negative bacteria.
Not to be confused with DNA barcoding. DNA metabarcoding is a method of DNA barcoding that uses universal genetic markers to identify DNA of a mixture of organisms. For elementary information on DNA barcoding, see here.
