Grimontia sedimenti

Last updated

Grimontia sedimenti
Scientific classification Red Pencil Icon.png
Domain: Bacteria
Phylum: Pseudomonadota
Class: Gammaproteobacteria
Order: Vibrionales
Family: Vibrionaceae
Genus: Grimontia
Species:
G. sedimenti
Binomial name
Grimontia sedimenti
Mahmoud et al. 2021 [1]
Type strain
S25 [2]

Grimontia sedimenti is a Gram-negative, slightly halophilic, facultative anaerobic and mesophilic bacterium species from the genus of Grimontia which has been isolated from benthic sediments near the cost of Kubbar Island. [1] [2]

Related Research Articles

<span class="mw-page-title-main">Benthos</span> Community of organisms that live in the benthic zone

Benthos, also known as benthon, is the community of organisms that live on, in, or near the bottom of a sea, river, lake, or stream, also known as the benthic zone. This community lives in or near marine or freshwater sedimentary environments, from tidal pools along the foreshore, out to the continental shelf, and then down to the abyssal depths.

<span class="mw-page-title-main">Cold seep</span> Ocean floor area where hydrogen sulfide, methane and other hydrocarbon-rich fluid seepage occurs

A cold seep is an area of the ocean floor where hydrogen sulfide, methane and other hydrocarbon-rich fluid seepage occurs, often in the form of a brine pool. Cold does not mean that the temperature of the seepage is lower than that of the surrounding sea water. On the contrary, its temperature is often slightly higher. The "cold" is relative to the very warm conditions of a hydrothermal vent. Cold seeps constitute a biome supporting several endemic species.

The pelagic zone consists of the water column of the open ocean, and can be further divided into regions by depth. The word pelagic is derived from Ancient Greek πέλαγος (pélagos) 'open sea'. The pelagic zone can be thought of as an imaginary cylinder or water column between the surface of the sea and the bottom. Conditions in the water column change with depth: pressure increases; temperature and light decrease; salinity, oxygen, micronutrients all change.

<span class="mw-page-title-main">Fauna</span> Set of animal species in any particular region and time

Fauna is all of the animal life present in a particular region or time. The corresponding term for plants is flora, and for fungi, it is funga. Flora, fauna, funga and other forms of life are collectively referred to as biota. Zoologists and paleontologists use fauna to refer to a typical collection of animals found in a specific time or place, e.g. the "Sonoran Desert fauna" or the "Burgess Shale fauna". Paleontologists sometimes refer to a sequence of faunal stages, which is a series of rocks all containing similar fossils. The study of animals of a particular region is called faunistics.

<span class="mw-page-title-main">Benthic zone</span> Ecological region at the lowest level of a body of water

The benthic zone is the ecological region at the lowest level of a body of water such as an ocean, lake, or stream, including the sediment surface and some sub-surface layers. The name comes from ancient Greek, βένθος (bénthos), meaning "the depths." Organisms living in this zone are called benthos and include microorganisms as well as larger invertebrates, such as crustaceans and polychaetes. Organisms here generally live in close relationship with the substrate and many are permanently attached to the bottom. The benthic boundary layer, which includes the bottom layer of water and the uppermost layer of sediment directly influenced by the overlying water, is an integral part of the benthic zone, as it greatly influences the biological activity that takes place there. Examples of contact soil layers include sand bottoms, rocky outcrops, coral, and bay mud.

<i>Kaikō</i> ROV Japanese remotely operated underwater vehicle for deep sea exploration

Kaikō was a remotely operated underwater vehicle (ROV) built by the Japan Agency for Marine-Earth Science and Technology (JAMSTEC) for exploration of the deep sea. Kaikō was the second of only five vessels ever to reach the bottom of the Challenger Deep, as of 2019. Between 1995 and 2003, this 10.6 ton unmanned submersible conducted more than 250 dives, collecting 350 biological species, some of which could prove to be useful in medical and industrial applications. On 29 May 2003, Kaikō was lost at sea off the coast of Shikoku Island during Typhoon Chan-Hom, when a secondary cable connecting it to its launcher at the ocean surface broke.

<span class="mw-page-title-main">Bioturbation</span> Reworking of soils and sediments by organisms.

Bioturbation is defined as the reworking of soils and sediments by animals or plants. It includes burrowing, ingestion, and defecation of sediment grains. Bioturbating activities have a profound effect on the environment and are thought to be a primary driver of biodiversity. The formal study of bioturbation began in the 1800s by Charles Darwin experimenting in his garden. The disruption of aquatic sediments and terrestrial soils through bioturbating activities provides significant ecosystem services. These include the alteration of nutrients in aquatic sediment and overlying water, shelter to other species in the form of burrows in terrestrial and water ecosystems, and soil production on land.

<span class="mw-page-title-main">Demersal fish</span> Fish that live and feed on or near the bottom of seas or lakes

Demersal fish, also known as groundfish, live and feed on or near the bottom of seas or lakes. They occupy the sea floors and lake beds, which usually consist of mud, sand, gravel or rocks. In coastal waters they are found on or near the continental shelf, and in deep waters they are found on or near the continental slope or along the continental rise. They are not generally found in the deepest waters, such as abyssal depths or on the abyssal plain, but they can be found around seamounts and islands. The word demersal comes from the Latin demergere, which means to sink.

<span class="mw-page-title-main">Lake ecosystem</span> Type of ecosystem

A lake ecosystem or lacustrine ecosystem includes biotic (living) plants, animals and micro-organisms, as well as abiotic (non-living) physical and chemical interactions. Lake ecosystems are a prime example of lentic ecosystems, which include ponds, lakes and wetlands, and much of this article applies to lentic ecosystems in general. Lentic ecosystems can be compared with lotic ecosystems, which involve flowing terrestrial waters such as rivers and streams. Together, these two ecosystems are examples of freshwater ecosystems.

<span class="mw-page-title-main">Marine sediment</span>

Marine sediment, or ocean sediment, or seafloor sediment, are deposits of insoluble particles that have accumulated on the seafloor. These particles have their origins in soil and rocks and have been transported from the land to the sea, mainly by rivers but also by dust carried by wind and by the flow of glaciers into the sea. Additional deposits come from marine organisms and chemical precipitation in seawater, as well as from underwater volcanoes and meteorite debris.

Sediment Profile Imagery (SPI) is an underwater technique for photographing the interface between the seabed and the overlying water. The technique is used to measure or estimate biological, chemical, and physical processes occurring in the first few centimetres of sediment, pore water, and the important benthic boundary layer of water. Time-lapse imaging (tSPI) is used to examine biological activity over natural cycles, like tides and daylight or anthropogenic variables like feeding loads in aquaculture. SPI systems cost between tens and hundreds of thousands of dollars and weigh between 20 and 400 kilograms. Traditional SPI units can be effectively used to explore continental shelf and abyssal depths. Recently developed SPI-Scan or rSPI systems can now also be used to inexpensively investigate shallow (<50m) freshwater, estuarine, and marine systems.

<span class="mw-page-title-main">Macrobenthos</span> Organisms that live at the bottom of a water column

Macrobenthos consists of the organisms that live at the bottom of a water column and are visible to the naked eye. In some classification schemes, these organisms are larger than 1 mm; in another, the smallest dimension must be at least 0.5 mm. They include polychaete worms, pelecypods, anthozoans, echinoderms, sponges, ascidians, crustaceans.

The Integrated Marine and Coastal Regionalisation of Australia (IMCRA), formerly the Interim Marine and Coastal Regionalisation for Australia, is a biogeographic regionalisation of the oceanic waters of Australia's exclusive economic zone (EEZ). As of 2008, the most recent version is IMCRA Version 4.0.

<span class="mw-page-title-main">Bottom feeder</span> Aquatic animal that feeds on the bottom of a body of water

A bottom feeder is an aquatic animal that feeds on or near the bottom of a body of water. Biologists often use the terms benthos—particularly for invertebrates such as shellfish, crabs, crayfish, sea anemones, starfish, snails, bristleworms and sea cucumbers—and benthivore or benthivorous, for fish and invertebrates that feed on material from the bottom. However the term benthos includes all aquatic life that lives on or near the bottom, which means it also includes non-animals, such as plants and algae. Biologists also use specific terms that refer to bottom feeding fish, such as demersal fish, groundfish, benthic fish and benthopelagic fish. Examples of bottom feeding fish species groups are flatfish, eels, cod, haddock, bass, grouper, carp, bream (snapper) and some species of catfish and shark.

<span class="mw-page-title-main">Contourite</span> Type of sedimentary deposit

A contourite is a sedimentary deposit commonly formed on continental rise to lower slope settings, although they may occur anywhere that is below storm wave base. Countourites are produced by thermohaline-induced deepwater bottom currents and may be influenced by wind or tidal forces. The geomorphology of contourite deposits is mainly influenced by the deepwater bottom-current velocity, sediment supply, and seafloor topography.

In aquatic toxicology, the sediment quality triad (SQT) approach has been used as an assessment tool to evaluate the extent of sediment degradation resulting from contaminants released due to human activity present in aquatic environments. This evaluation focuses on three main components: 1.) sediment chemistry, 2.) sediment toxicity tests using aquatic organisms, and 3.) the field effects on the benthic organisms. Often used in risk assessment, the combination of three lines of evidence can lead to a comprehensive understanding of the possible effects to the aquatic community. Although the SQT approach does not provide a cause-and-effect relationship linking concentrations of individual chemicals to adverse biological effects, it does provide an assessment of sediment quality commonly used to explain sediment characteristics quantitatively. The information provided by each portion of the SQT is unique and complementary, and the combination of these portions is necessary because no single characteristic provides comprehensive information regarding a specific site

<span class="mw-page-title-main">Benthic-pelagic coupling</span>

Benthic-pelagic coupling are processes that connect the benthic zone and the pelagic zone through the exchange of energy, mass, or nutrients. These processes play a prominent role in both freshwater and marine ecosystems and are influenced by a number of chemical, biological, and physical forces that are crucial to functions from nutrient cycling to energy transfer in food webs.

Grimontia celer is a Gram-negative bacterium species from the genus of Grimontia which has been isolated from sea water.

Grimontia indica is a Gram-negative, rod-shaped and facultative aerobic bacterium species from the genus of Grimontia which has been isolated from Seawater from the southeast coast of the Palk Bay.

Grimontia marina is a Gram-negative, chemoheterotrophic and obligately aerobic bacterium species from the genus of Grimontia which has been isolated from Yellow Sea.

References

  1. 1 2 "Species: Grimontia sedimenti". LPSN.DSMZ.de.
  2. 1 2 Mahmoud, Huda; Jose, Liny; Eapen, Susan (6 June 2019). "Grimontia sedimenti sp. nov., isolated from benthic sediments near coral reefs south of Kuwait". International Journal of Systematic and Evolutionary Microbiology. 71 (3). doi:10.1099/ijsem.0.004720. PMC   8375428 . PMID   33629941.