Isolation chip

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The Isolation chip (or ichip) is a method of culturing bacteria. Using regular methods, 99% of bacterial species found in nature are not able to be cultured as they do not grow in conditions made in a laboratory, a problem called the great plate count anomaly. [1] The ichip instead cultures bacterial species within its soil environment using tiny diffusion chambers. [2] The soil is diluted in molten agar and nutrients such that only a single cell, on average, grows in the ichip's small compartments or wells, hence the term "isolation". The chip is then enclosed in a semipermeable plastic membrane and buried back in the dirt to allow in nutrients not available in the lab. [3] With this culturing method, about 50 to 60 percent of bacterial species are able to survive. [3]

This is of particular relevance to drug discovery. Notably, the bacterial species Eleftheria terrae , which makes the antibiotic teixobactin that has shown promise against many drug-resistant strains like methicillin-resistant Staphylococcus aureus, was discovered using the ichip in 2015. In addition to antibiotics, it is argued that anti-cancer agents, anti-inflammatory and immunosuppressives (which have previously been discovered from bacteria) as well as potential energy sources could be discovered. [1]

The ichip was developed by the drug discovery company NovoBiotic Pharmaceuticals, founded by Kim Lewis and Slava Epstein. [3]

References

  1. 1 2 "iChip: The future of antibiotic discovery". popsci.com. Retrieved 3 October 2015.
  2. Berdy, Brittany; Spoering, Amy L.; Ling, Losee L.; Epstein, Slava S. (October 2017). "In situ cultivation of previously uncultivable microorganisms using the ichip". Nature Protocols. 12 (10): 2232–2242. doi:10.1038/nprot.2017.074. ISSN   1750-2799.
  3. 1 2 3 "The age of infection". foreignpolicy.com. Retrieved 2 October 2015.