Jeffrey L. Bada | |
---|---|
Born | San Diego, California | September 10, 1942
Nationality | American |
Citizenship | US |
Alma mater | San Diego State University (BS) University of California, San Diego (PhD) |
Known for | Studying the origin of life |
Scientific career | |
Fields | Chemistry Astrobiology |
Institutions | University of California, San Diego |
Doctoral advisor | Stanley Miller |
Website | Homepage at SCRIPPS |
Jeffrey L. Bada (born September 10, 1942) [1] is an American chemist known for his works in the study of the origin of life. He is Distinguished Research Professor of Marine Chemistry and former Director of the NASA Specialized Center of Research and Training (NSCORT) in Exobiology at the Scripps Institution of Oceanography, University of California, San Diego. Bada has played a pioneering role in the development of the Mars Organic Detector (MOD) instrument package that is designed to search for amino acids and other organic compounds directly on the surface of Mars during future ESA and NASA missions. [2]
Bada studied at the San Diego State University and obtained BS in chemistry in 1965. He wanted to become a theoretical chemist, applying quantum mechanics to chemistry and had no prior interest in prebiotic chemistry. Then he met Stanley Miller at the University of California, San Diego (UCSD) who inspired him to take up the spark discharge experiment a step forward by studying amino acid stability. Bada completed PhD in Chemistry in 1968 under Miller's supervision. [3] He worked as Research Fellow at the Hoffman Labs of the Department of Geological Science at Harvard University for one year. [1] In 1968 he joined the UCSD Department of Chemistry as Instructor, and became Assistant Professor of Marine Chemistry in 1969. He became Associate Professor in 1974 and full professor in 1980. Between 1980 and 2009 he was Director of NASA Specialized Center of Research and Training (NSCORT) in Exobiology. In 2009 he was promoted to Distinguished Professor, and in 2010 to Distinguished Research Professor. He has more than 200 technical publications. [2]
As a marine geochemist, Bada made significant research in geochronology. During the 1970s and 1980s he developed an important technique of marine sediment dating through the measurement of the racemisation rates of amino acids. This method is useful for dating a large span in geological time scale. This is useful in marine biology, palaeontology and archaeology for dating millions of years old organic materials based on their amino acid content. [1] [4]
Bada is a leading scientist in the study of organic compounds outside of the Earth. Among his works was the analysis of the Martian meteorite Nakhla, which fell in Egypt in 1911. His team found aspartic acid, glutamic acids, glycine, alanine, beta-alanine, and gamma-aminobutyric acid as the most abundant amino acids in the meteorite. [5] This a supports the notion that the organic building blocks of life could be naturally synthesized and were present in the making of the solar system. He and his team also developed a Mars Organic Analyzer (MOA), which is a microfabricated capillary electrophoresis (CE) instrument for sensitive amino acid biomarker analysis. [6] The device is useful in planetary exploration such as for the analysis of even trace amounts of amino acids, mono- and diaminoalkanes, amino sugars, nucleobases, and nucleobase degradation products from living and non-living materials. [7]
Jeffrey Bada is best known for his research on the origin of life, following his mentor Miller, whose laboratory he inherited. In fact his most famous works, perhaps, are his reassessment and validation of the original Miller's experiments. [8] [9] In 1999, Miller had a stroke and on thinking of his medical condition, he donated everything in his office to Bada's laboratory. [3] Just before Miller's death in 2007, several cardboard boxes containing vials of dried residues were found in his laboratory at UCSD. The labels indicated that some were from Miller's original 1952–1954 experiments, produced by using three different apparatuses, and one from 1958, which included H2S in the gaseous mixture for the first time and the result never published. In 2008 Bada and his team reported a re-analysis of the 1952 samples using more sensitive techniques, such as high-performance liquid chromatography and liquid chromatography–time of flight mass spectrometry. Their result showed the synthesis of 22 amino acids and 5 amines, revealing that the original Miller experiment produced many more compounds than previously believed. [10] Miller's report of 1953 mentioned synthesis of only glycine, α- and β-alanine, with uncertain aspartic acid and GABA. [11] In addition Bada also analysed the unreported 1958 samples in 2011, from which 23 amino acids and 4 amines, including 7 organosulfur compounds, were detected. [12] [13] [14] [15]
Guanine is one of the four main nucleobases found in the nucleic acids DNA and RNA, the others being adenine, cytosine, and thymine. In DNA, guanine is paired with cytosine. The guanine nucleoside is called guanosine.
The Miller–Urey experiment (or Miller experiment) is a famous chemistry experiment that simulated the conditions thought at the time (1952) to be present in the atmosphere of the early, prebiotic Earth, in order to test the hypothesis of the chemical origin of life under those conditions. The experiment used water (H2O), methane (CH4), ammonia (NH3), hydrogen (H2), and an electric arc (the latter simulating hypothesized lightning).
The RNA world is a hypothetical stage in the evolutionary history of life on Earth, in which self-replicating RNA molecules proliferated before the evolution of DNA and proteins. The term also refers to the hypothesis that posits the existence of this stage.
Alanine (symbol Ala or A), or α-alanine, is an α-amino acid that is used in the biosynthesis of proteins. It contains an amine group and a carboxylic acid group, both attached to the central carbon atom which also carries a methyl group side chain. Consequently, its IUPAC systematic name is 2-aminopropanoic acid, and it is classified as a nonpolar, aliphatic α-amino acid. Under biological conditions, it exists in its zwitterionic form with its amine group protonated (as −NH3+) and its carboxyl group deprotonated (as −CO2−). It is non-essential to humans as it can be synthesised metabolically and does not need to be present in the diet. It is encoded by all codons starting with GC (GCU, GCC, GCA, and GCG).
Nucleobases, also known as nitrogenous bases or often simply bases, are nitrogen-containing biological compounds that form nucleosides, which, in turn, are components of nucleotides, with all of these monomers constituting the basic building blocks of nucleic acids. The ability of nucleobases to form base pairs and to stack one upon another leads directly to long-chain helical structures such as ribonucleic acid (RNA) and deoxyribonucleic acid (DNA). Five nucleobases—adenine (A), cytosine (C), guanine (G), thymine (T), and uracil (U)—are called primary or canonical. They function as the fundamental units of the genetic code, with the bases A, G, C, and T being found in DNA while A, G, C, and U are found in RNA. Thymine and uracil are distinguished by merely the presence or absence of a methyl group on the fifth carbon (C5) of these heterocyclic six-membered rings. In addition, some viruses have aminoadenine (Z) instead of adenine. It differs in having an extra amine group, creating a more stable bond to thymine.
Stanley Lloyd Miller was an American chemist who made landmark experiments in the origin of life by demonstrating that a wide range of vital organic compounds can be synthesized by fairly simple chemical processes from inorganic substances. In 1952 he carried out the Miller–Urey experiment, which showed that complex organic molecules could be synthesised from inorganic precursors. The experiment was widely reported, and provided support for the idea that the chemical evolution of the early Earth had led to the natural synthesis of chemical building blocks of life from inanimate inorganic molecules. He has been described as the "father of prebiotic chemistry".
The iron–sulfur world hypothesis is a set of proposals for the origin of life and the early evolution of life advanced in a series of articles between 1988 and 1992 by Günter Wächtershäuser, a Munich patent lawyer with a degree in chemistry, who had been encouraged and supported by philosopher Karl R. Popper to publish his ideas. The hypothesis proposes that early life may have formed on the surface of iron sulfide minerals, hence the name. It was developed by retrodiction from extant biochemistry in conjunction with chemical experiments.
Leslie Eleazer Orgel FRS was a British chemist. He is known for his theories on the origin of life.
Joan Oró i Florensa was a Spanish biochemist, whose research has been of importance in understanding the origin of life. He participated in several NASA missions, including Apollo mission to the Moon and the Viking lander. He received the Oparin Medal, awarded by the International Astrobiology Society for his contributions to the field of origins of life.
Carbonaceous chondrites or C chondrites are a class of chondritic meteorites comprising at least 8 known groups and many ungrouped meteorites. They include some of the most primitive known meteorites. The C chondrites represent only a small proportion (4.6%) of meteorite falls.
The Murchison meteorite is a meteorite that fell in Australia in 1969 near Murchison, Victoria. It belongs to the carbonaceous chondrite class, a group of meteorites rich in organic compounds. Due to its mass and the fact that it was an observed fall, the Murchison meteorite is one of the most studied of all meteorites.
Transaminases or aminotransferases are enzymes that catalyze a transamination reaction between an amino acid and an α-keto acid. They are important in the synthesis of amino acids, which form proteins.
Nucleic acid analogues are compounds which are analogous to naturally occurring RNA and DNA, used in medicine and in molecular biology research. Nucleic acids are chains of nucleotides, which are composed of three parts: a phosphate backbone, a pentose sugar, either ribose or deoxyribose, and one of four nucleobases. An analogue may have any of these altered. Typically the analogue nucleobases confer, among other things, different base pairing and base stacking properties. Examples include universal bases, which can pair with all four canonical bases, and phosphate-sugar backbone analogues such as PNA, which affect the properties of the chain . Nucleic acid analogues are also called Xeno Nucleic Acid and represent one of the main pillars of xenobiology, the design of new-to-nature forms of life based on alternative biochemistries.
In biology, abiogenesis or the origin of life is the natural process by which life has arisen from non-living matter, such as simple organic compounds. The prevailing scientific hypothesis is that the transition from non-living to living entities on Earth was not a single event, but a process of increasing complexity involving the formation of a habitable planet, the prebiotic synthesis of organic molecules, molecular self-replication, self-assembly, autocatalysis, and the emergence of cell membranes. Many proposals have been made for different stages of the process.
In biochemistry, non-coded or non-proteinogenic amino acids are distinct from the 22 proteinogenic amino acids which are naturally encoded in the genome of organisms for the assembly of proteins. However, over 140 non-proteinogenic amino acids occur naturally in proteins and thousands more may occur in nature or be synthesized in the laboratory. Chemically synthesized amino acids can be called unnatural amino acids. Unnatural amino acids can be synthetically prepared from their native analogs via modifications such as amine alkylation, side chain substitution, structural bond extension cyclization, and isosteric replacements within the amino acid backbone. Many non-proteinogenic amino acids are important:
Sandra Pizzarello, D.Bi.Sc. was a Venetian biochemist known for her co-discovery of amino acid enantiomeric excess in carbonaceous chondrite meteorites. Her research interests concerned the characterization of meteoritic organic compounds in elucidating the evolution of planetary homochirality. Pizzarello was a project collaborator and co-investigator for the NASA Astrobiology Institute (NAI), the president of the International Society for the Study of the Origin of Life (2014-2017), and an emerita professor at Arizona State University (ASU).
Formamide-based prebiotic chemistry is a reconstruction of the beginnings of life on Earth, assuming that formamide could accumulate in sufficiently high amounts to serve as the building block and reaction medium for the synthesis of the first biogenic molecules.
The Urey instrument, or Urey: Mars Organic and Oxidant Detector was a developmental spacecraft instrument for detecting organic compounds including amino acids.
D-Amino acids are amino acids where the stereogenic carbon alpha to the amino group has the D-configuration. For most naturally-occurring amino acids, this carbon has the L-configuration. D-Amino acids are occasionally found in nature as residues in proteins. They are formed from ribosomally-derived D-amino acid residues.
In organic chemistry, secondary amino acids are amino acids which do not contain the amino group −NH2 but is rather a secondary amine. Secondary amino acids can be classified to cyclic acids, such as proline, and acyclic N-substituted amino acids.