Lethal dwarfism in rabbits

Last updated

In the rabbit (Oryctolagus cuniculus), lethal dwarfism occurs in individuals homozygous for the dwarf allele (dwdw). [1] [2] Homozygosity for the dwarf allele results in a lethal autosomal recessive mutation. [1] [2] This is caused by a loss of function (LOF) mutation in the High mobility AT-hook 2 ( HMGA2 ) gene, spanning 12.1Kb from 44,709,089 bp to 44,721,236 bp that removes the gene promotor as well as multiple exons. [1] [2] This mutation greatly affects growth of homozygous embryos (resulting in stunted size and altered craniofacial development) and homozygous kits once born. [1] These individuals homozygous for the dwarf allele are viable in the womb but die days after being born. [2] Individuals that are heterozygous for the dwarf allele are healthy and unaffected by the lethality of the mutation, but are smaller than individuals homozygous for the wild type allele. [1] [2]

Contents

Dwarf rabbits

Domestication of rabbits originated in the Catholic monasteries of Southern France around 500-600 AD. [1] [3] [4] Species believed to have been present in the region were Oryctolagus cuniculus cuniculus and O. c. algirus, native to the Iberian Peninsula, as well as O. c. cuniculus, a species native to France. [3] At this point in time, rabbits were mainly being raised for meat, and therefore, a larger, bulkier rabbit was preferred. [1] It was not until much later that rabbits solely as pets gained popularity, and as they did, breeding for smaller size became more prevalent.[ citation needed ]

Today, dwarf rabbits are largely popular and nine different breeds are accepted by the American Rabbit Breeder’s Association (ARBA) [5] with many others accepted in other countries. These breeds vary greatly in characteristics [5] but they all have the dwarf allele in common. Small non-dwarf breeds, though they can be a similar weight to dwarfs, do not carry the dwarf allele and thus do not produce "peanuts" (dwdw kits) in their litters. Though size of dwarf and small non-dwarf rabbit breeds may be similar, dwarfs have features unique to them. Dwarf rabbits have characteristically large, blocky heads that appear disproportional to their small, rounded bodies, with short noses and short, thick ears, [1] [2] allowing them to stand apart from other breeds in their proportions alone.[ citation needed ]

Dwarf allele

Dwarfs owe their small size and features to both the dwarf allele (dw) and selective breeding, [1] where rabbits are selected by humans for their characteristics, resulting in more offspring of the desired characteristic. Rabbits possessing two copies of the wild type allele (Dw/Dw) are larger than their other dwarf littermates, but these individuals that are homozygous for the wild type allele are still smaller that standard sized rabbits. [1] This is because of selective breeding over the years selecting for a smaller size. Individuals heterozygous for the dwarf allele (Dw/dw) are what we typically think of as dwarfs. These are the individuals that are most often seen representing their breed because they more easily fit into weight requirements for competitions. They are about 2/3 the size of their homozygous wild type allele littermates. [1] Because of this, we see the dwarf allele greatly contributes to the small size of dwarfs, but it is also a lethal autosomal recessive mutation. [1] Kits (rabbit young) homozygous for the dwarf allele (dwdw) are often referred to as "peanuts", and although viable up to birth, die days afterwards. [1] [2] Physically, they differ greatly from their healthy littermates and differentiation is possible at birth. [2] Peanuts are significantly smaller than their healthy littermates (about 1/3 the size of a healthy kit) [2] and often possess swollen heads and smaller than normal ears. [1] They also have been reported to have incompletely calcified calvariums, [6] adding to deformity of their skulls. Peanuts exhibit a greatly decreased growth rate, [2] and although it has been reported that some are capable of nursing, [6] they are quickly left behind in growth and weight by their healthy littermates as they appear to not be growing at all. Peanuts are a common occurrence in dwarf litters, with there being a 1/4 chance of a kit being a peanut if both parents are heterozygous for the dwarf allele. There have been multiple reports of different organ systems being negatively affected by the peanut phenotype, including inhibition of the endocrine system at the pituitary. [2] [7] This could in part explain the inhibition of growth in dwdw kits.

The dwarf allele has been shown to have a genetic linkage with the Agouti gene, pointing to its presence on chromosome 4. [1] [2] Location of the dwarf allele on chromosome 4 has been confirmed through heterozygosity mapping. [1]

Causal mutation for Dwarf allele

The causal mutation for the dwarf allele has been found to be a 12.1Kb deletion from 44,709,089 bp to 44,721,236 bp in the high mobility AT-hook 2 (HMGA2) gene (also known as HMGI-C). [1] [2] This deletion mutation removes the promoter as well as the first three exons of the gene, rendering it inactivated. [1] [2] This results in the gene being “knocked out” and rendered nonfunctional. [1]

High mobility AT-hook 2 ( HMGA2 ) is an architectural transcription factor, a protein complex that mediates structure of interactions between DNA and protein and facilitates contact between DNA sequences within the genome. [1] [8] [9] Essentially, HMGA2 regulates transcription' [1] HMGA2 belongs to a family of non-histone chromatin proteins. [1] [2] HMGA2 has associations with body size in humans, [10] mice, [11] dogs, [12] and horses. [13] Research has also shown beak size in different species of Darwin’s finches correlate with a genomic region containing HMGA2, [14] adding to its associations with size across a wide number of species.[ citation needed ]

In rabbits, HMGA2 regulates growth of embryos and has been associated with mitochondrial function. [1] HMGA2 is also required for normal IGF2BP2 expression. [1] IGF2BP2 is an RNA binding protein that affects the translation of many different RNAs. [1]

Related Research Articles

<span class="mw-page-title-main">Dominance (genetics)</span> One gene variant masking the effect of another in the other copy of the gene

In genetics, dominance is the phenomenon of one variant (allele) of a gene on a chromosome masking or overriding the effect of a different variant of the same gene on the other copy of the chromosome. The first variant is termed dominant and the second is called recessive. This state of having two different variants of the same gene on each chromosome is originally caused by a mutation in one of the genes, either new or inherited. The terms autosomal dominant or autosomal recessive are used to describe gene variants on non-sex chromosomes (autosomes) and their associated traits, while those on sex chromosomes (allosomes) are termed X-linked dominant, X-linked recessive or Y-linked; these have an inheritance and presentation pattern that depends on the sex of both the parent and the child. Since there is only one copy of the Y chromosome, Y-linked traits cannot be dominant or recessive. Additionally, there are other forms of dominance, such as incomplete dominance, in which a gene variant has a partial effect compared to when it is present on both chromosomes and co-dominance, in which different variants on each chromosome both show their associated traits.

<span class="mw-page-title-main">Lethal white syndrome</span> Medical condition

Lethal white syndrome (LWS), also called overo lethal white syndrome (OLWS), lethal white overo (LWO), and overo lethal white foal syndrome (OLWFS), is an autosomal genetic disorder most prevalent in the American Paint Horse. Affected foals are born after the full 11-month gestation and externally appear normal, though they have all-white or nearly all-white coats and blue eyes. However, internally, these foals have a nonfunctioning colon. Within a few hours, signs of colic appear; affected foals die within a few days. Because the death is often painful, such foals are often humanely euthanized once identified. The disease is particularly devastating because foals are born seemingly healthy after being carried to full term.

<span class="mw-page-title-main">Cream gene</span> Gene for several horse coat colors

The cream gene is responsible for a number of horse coat colors. Horses that have the cream gene in addition to a base coat color that is chestnut will become palomino if they are heterozygous, having one copy of the cream gene, or cremello, if they are homozygous. Similarly, horses with a bay base coat and the cream gene will be buckskin or perlino. A black base coat with the cream gene becomes the not-always-recognized smoky black or a smoky cream. Cream horses, even those with blue eyes, are not white horses. Dilution coloring is also not related to any of the white spotting patterns.

<span class="mw-page-title-main">Equine coat color genetics</span> Genetics behind the equine coat color

Equine coat color genetics determine a horse's coat color. Many colors are possible, but all variations are produced by changes in only a few genes. Bay is the most common color of horse, followed by black and chestnut. A change at the agouti locus is capable of turning bay to black, while a mutation at the extension locus can turn bay or black to chestnut.

<span class="mw-page-title-main">Chondrocyte</span> Cell that makes up cartilage

Chondrocytes are the only cells found in healthy cartilage. They produce and maintain the cartilaginous matrix, which consists mainly of collagen and proteoglycans. Although the word chondroblast is commonly used to describe an immature chondrocyte, the term is imprecise, since the progenitor of chondrocytes can differentiate into various cell types, including osteoblasts.

<span class="mw-page-title-main">Haploinsufficiency</span> Concept in genetics

Haploinsufficiency in genetics describes a model of dominant gene action in diploid organisms, in which a single copy of the wild-type allele at a locus in heterozygous combination with a variant allele is insufficient to produce the wild-type phenotype. Haploinsufficiency may arise from a de novo or inherited loss-of-function mutation in the variant allele, such that it yields little or no gene product. Although the other, standard allele still produces the standard amount of product, the total product is insufficient to produce the standard phenotype. This heterozygous genotype may result in a non- or sub-standard, deleterious, and (or) disease phenotype. Haploinsufficiency is the standard explanation for dominant deleterious alleles.

A null allele is a nonfunctional allele caused by a genetic mutation. Such mutations can cause a complete lack of production of the associated gene product or a product that does not function properly; in either case, the allele may be considered nonfunctional. A null allele cannot be distinguished from deletion of the entire locus solely from phenotypic observation.

Inbreeding depression is the reduced biological fitness which has the potential to result from inbreeding. Biological fitness refers to an organism's ability to survive and perpetuate its genetic material. Inbreeding depression is often the result of a population bottleneck. In general, the higher the genetic variation or gene pool within a breeding population, the less likely it is to suffer from inbreeding depression, though inbreeding and outbreeding depression can simultaneously occur.

<span class="mw-page-title-main">UDP glucuronosyltransferase 1 family, polypeptide A1</span> Enzyme found in humans

UDP-glucuronosyltransferase 1-1 also known as UGT-1A is an enzyme that in humans is encoded by the UGT1A1 gene.

<span class="mw-page-title-main">Sabino horse</span> Color pattern in horses

Sabino describes a distinct pattern of white spotting in horses. In general, Sabino patterning is visually recognized by roaning or irregular edges of white markings, belly spots, white extending past the eyes or onto the chin, white above the knees or hocks, and "splash" or "lacy" marks anywhere on the body. Some sabinos have patches of roan patterning on part of the body, especially the barrel and flanks. Some sabinos may have a dark leg or two, but many have four white legs. Sabino patterns may range from slightly bold face or leg white markings—as little as white on the chin or lower lip—to horses that are fully white.

Superman is a plant gene in Arabidopsis thaliana, that plays a role in controlling the boundary between stamen and carpel development in a flower. It is named for the comic book character Superman, and the related genes kryptonite (gene) and clark kent were named accordingly. It encodes a transcription factor. Homologous genes are known in the petunia and snapdragon, which are also involved in flower development, although in both cases there are important differences from the functioning in Arabidopsis. Superman is expressed early on in flower development, in the stamen whorl adjacent to the carpel whorl. It interacts with the other genes of the ABC model of flower development in a variety of ways.

Lethal alleles are alleles that cause the death of the organism that carries them. They are usually a result of mutations in genes that are essential for growth or development. Lethal alleles may be recessive, dominant, or conditional depending on the gene or genes involved.

<span class="mw-page-title-main">60S ribosomal protein L38</span> Protein found in humans

60S ribosomal protein L38 is a protein that in humans is encoded by the RPL38 gene.

<span class="mw-page-title-main">Dominant white</span> Horse coat color and its genetics

Dominant white (W) is a group of genetically related coat color alleles on the KIT gene of the horse, best known for producing an all-white coat, but also able to produce various forms of white spotting, as well as bold white markings. Prior to the discovery of the W allelic series, many of these patterns were described by the term sabino, which is still used by some breed registries.

<span class="mw-page-title-main">Zygosity</span> Degree of similarity of the alleles in an organism

Zygosity is the degree to which both copies of a chromosome or gene have the same genetic sequence. In other words, it is the degree of similarity of the alleles in an organism.

<span class="mw-page-title-main">Roan (horse)</span> Horse coat color pattern characterized by an even mixture of colored and white hairs on the body

Roan is a horse coat color pattern characterized by an even mixture of colored and white hairs on the body, while the head and "points"—lower legs, mane, and tail—are mostly solid-colored. Horses with roan coats have white hairs evenly intermingled throughout any other color. The head, legs, mane, and tail have fewer scattered white hairs or none at all. The roan pattern is dominantly inherited, and is found in many horse breeds. While the specific mutation responsible for roan has not been exactly identified, a DNA test can determine zygosity for roan in several breeds. True roan is always present at birth, though it may be hard to see until after the foal coat sheds out. The coat may lighten or darken from winter to summer, but unlike the gray coat color, which also begins with intermixed white and colored hairs, roans do not become progressively lighter in color as they age. The silvering effect of mixed white and colored hairs can create coats that look bluish or pinkish.

Sex-linked barring is a plumage pattern on individual feathers in chickens, which is characterized by alternating pigmented and apigmented bars. The pigmented bar can either contain red pigment (phaeomelanin) or black pigment (eumelanin) whereas the apigmented bar is always white. The locus is therefore often referred to as an ‘eumelanin diluter’ or ‘melanin disruptor’. Typical sex-linked barred breeds include the Barred Plymouth Rock, Delaware, Old English Crele Games as well as Coucou de Renne.

<span class="mw-page-title-main">Dog coat genetics</span> Genetics behind dog coat

Dogs have a wide range of coat colors, patterns, textures and lengths. Dog coat color is governed by how genes are passed from dogs to their puppies and how those genes are expressed in each dog. Dogs have about 19,000 genes in their genome but only a handful affect the physical variations in their coats. Most genes come in pairs, one being from the dog's mother and one being from its father. Genes of interest have more than one expression of an allele. Usually only one, or a small number of alleles exist for each gene. In any one gene locus a dog will either be homozygous where the gene is made of two identical alleles or heterozygous where the gene is made of two different alleles.

The agouti gene, the Agouti-signaling protein (ASIP) is responsible for variations in color in many species. Agouti works with extension to regulate the color of melanin which is produced in hairs. The agouti protein causes red to yellow pheomelanin to be produced, while the competing molecule α-MSH signals production of brown to black eumelanin. In wildtype mice, alternating cycles of agouti and α-MSH production cause agouti coloration. Each hair has bands of yellow which grew during agouti production, and black which grew during α-MSH production. Wildtype mice also have light-colored bellies. The hairs there are a creamy color the whole length because the agouti protein was produced the whole time the hairs were growing.

References

  1. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 Carneiro, Miguel; Hu, Dou; Archer, John; Feng, Chungang; Afonso, Sandra; Chen, Congying; Blanco-Aguiar, José A.; Garreau, Hervé; Boucher, Samuel; Ferreira, Paula G.; Ferrand, Nuno; Rubin, Carl-Johan; Andersson, Leif (February 2017). "Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus". Genetics. 205 (2): 955–965. doi:10.1534/genetics.116.196667. ISSN   0016-6731. PMC   5289862 . PMID   27986804.
  2. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Hu, Dou. "Identification and analysis of the dwarf mutation in domestic rabbits" (PDF).
  3. 1 2 Carneiro, Miguel; Rubin, Carl-Johan; Di Palma, Federica; Albert, Frank W.; Alföldi, Jessica; Martinez Barrio, Alvaro; Pielberg, Gerli; Rafati, Nima; Sayyab, Shumaila; Turner-Maier, Jason; Younis, Shady; Afonso, Sandra; Aken, Bronwen; Alves, Joel M.; Barrell, Daniel (2014-08-29). "Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication". Science. 345 (6200): 1074–1079. Bibcode:2014Sci...345.1074C. doi:10.1126/science.1253714. ISSN   1095-9203. PMC   5421586 . PMID   25170157.
  4. Carneiro, M.; Afonso, S.; Geraldes, A.; Garreau, H.; Bolet, G.; Boucher, S.; Tircazes, A.; Queney, G.; Nachman, M. W.; Ferrand, N. (2011-06-01). "The Genetic Structure of Domestic Rabbits". Molecular Biology and Evolution. 28 (6): 1801–1816. doi:10.1093/molbev/msr003. ISSN   0737-4038. PMC   3695642 . PMID   21216839.
  5. 1 2 Randy Hall. "Recognized Breeds". ARBA. Retrieved 2022-11-04.
  6. 1 2 Greene, Harry S. N.; Hu, C. K.; Brown, Wade H. (1934-05-25). "A Lethal Dwarf Mutation in the Rabbit with Stigmata of Endocrine Abnormality". Science. 79 (2056): 487–488. Bibcode:1934Sci....79..487G. doi:10.1126/science.79.2056.487. ISSN   0036-8075. PMID   17840734.
  7. Greene, H. S. (1940-05-31). "A Dwarf Mutation in the Rabbit". The Journal of Experimental Medicine. 71 (6): 839–856. doi:10.1084/jem.71.6.839. ISSN   0022-1007. PMC   2135107 . PMID   19871001.
  8. Cubeñas-Potts, Caelin; Corces, Victor G. (2015-10-07). "Architectural Proteins, Transcription, and the Three-dimensional Organization of the Genome". FEBS Letters. 589 (20 0 0): 2923–2930. doi:10.1016/j.febslet.2015.05.025. ISSN   0014-5793. PMC   4598269 . PMID   26008126.
  9. Shannon, M. F.; Coles, L. S.; Attema, J.; Diamond, P. (January 2001). "The role of architectural transcription factors in cytokine gene transcription". Journal of Leukocyte Biology. 69 (1): 21–32. doi:10.1189/jlb.69.1.21. ISSN   0741-5400. PMID   11200063. S2CID   6256909.
  10. Alyaqoub, Fadel; Pyatt, Robert E.; Bailes, Andrea; Brock, Amanda; Deeg, Carol; McKinney, Aimee; Astbury, Caroline; Reshmi, Shalini; Shane, Kate P.; Thrush, Devon Lamb; Sommer, Annemarie; Gastier-Foster, Julie M. (November 2012). "12q14 microdeletion associated with HMGA2 gene disruption and growth restriction". American Journal of Medical Genetics Part A. 158A (11): 2925–2930. doi: 10.1002/ajmg.a.35610 . PMID   22987822. S2CID   6018563.
  11. Zhou, Xianjin; Benson, Kathleen F.; Ashar, Hena R.; Chada, Kiran (August 1995). "Mutation responsible for the mouse pygmy phenotype in the developmentally regulated factor HMGI-C". Nature. 376 (6543): 771–774. Bibcode:1995Natur.376..771Z. doi:10.1038/376771a0. ISSN   1476-4687. PMID   7651535. S2CID   4289011.
  12. Webster, Matthew T.; Kamgari, Nona; Perloski, Michele; Hoeppner, Marc P.; Axelsson, Erik; Hedhammar, Åke; Pielberg, Gerli; Lindblad-Toh, Kerstin (2015-06-23). "Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds". BMC Genomics. 16 (1): 474. doi: 10.1186/s12864-015-1702-2 . ISSN   1471-2164. PMC   4477608 . PMID   26100605.
  13. Frischknecht, Mirjam; Jagannathan, Vidhya; Plattet, Philippe; Neuditschko, Markus; Signer-Hasler, Heidi; Bachmann, Iris; Pacholewska, Alicja; Drögemüller, Cord; Dietschi, Elisabeth; Flury, Christine; Rieder, Stefan; Leeb, Tosso (2015-10-16). "A Non-Synonymous HMGA2 Variant Decreases Height in Shetland Ponies and Other Small Horses". PLOS ONE. 10 (10): e0140749. Bibcode:2015PLoSO..1040749F. doi: 10.1371/journal.pone.0140749 . ISSN   1932-6203. PMC   4608717 . PMID   26474182.
  14. Lamichhaney, Sangeet; Han, Fan; Berglund, Jonas; Wang, Chao; Sallman Almen, Markus; Webster, Matthew; Grant, B.; Grant, Peter; Anderson, Leif (April 22, 2016). "A beak size locus in Darwin's finches facilitated character displacement during a drought". Science. 352 (6284): 470–474. Bibcode:2016Sci...352..470L. doi:10.1126/science.aad8786. PMID   27102486. S2CID   20990796.