The following is a list of NCAA Division I baseball career and single-season home run leaders.
| Rank | Player | School | Years | Games | Home runs |
|---|---|---|---|---|---|
| 1 | Pete Incaviglia | Oklahoma State | 1983–1985 | 213 | 100 |
| 2 | Jeff Ledbetter | Florida State | 1979–1982 | 262 | 97 |
| 3 | Todd Greene | Georgia Southern | 1990–1993 | 240 | 88 |
| 4 | Eddy Furniss | LSU | 1995–1998 | 265 | 80 |
| 5 | Frank Fazzini | Florida State | 1983–1985 | 234 | 79 |
| 6 | Brad Cresse | LSU | 1997–2000 | 236 | 78 |
| 7 | George Canale | Virginia Tech | 1984–1986 | 180 | 76 |
| 8 | Chad Sutter | Tulane | 1996–1999 | 244 | 75 |
| 9 | Matt LaPorta | Florida | 2004–2007 | 215 | 74 |
| 10 | Cory Snyder | BYU | 1982–1984 | 173 | 73 |
| 11 | T.J. Soto | La Tech | 1995–2000 | 219 | 72 |
| Rank | Player | School | Year | Games | Home runs |
|---|---|---|---|---|---|
| 1 | Pete Incaviglia | Oklahoma State | 1985 | 75 | 48 |
| 2 | Jeff Ledbetter | Florida State | 1982 | 74 | 42 |
| 3 | Lance Berkman | Rice | 1997 | 63 | 41 |
| 4 | Brandon Larson | LSU | 1997 | 69 | 40 |
| 5 | Steve Hacker | Missouri State | 1995 | 58 | 37 |
| 6 | Russ Spence | Auburn | 1988 | 62 | 36 |
| t-7 | Troy Glaus | UCLA | 1997 | 67 | 34 |
| t-7 | Daylan Holt | Texas A&M | 1999 | 70 | 34 |
| t-9 | Joe Dillon | Texas Tech | 1997 | 57 | 33 |
| t-9 | Frank Fazzini | Florida State | 1985 | 81 | 33 |
| t-9 | Nate Gold | Gonzaga | 2002 | 56 | 33 |
| t-9 | Kevin Mench | Delaware | 1998 | 52 | 33 |
| t-13 | Billy Becher | New Mexico State | 2003 | 61 | 32 |
| t-13 | Mark McGwire | Southern California | 1984 | 67 | 32 |
| t-13 | Lance Shebelut | Fresno State | 1988 | 68 | 32 |
| t-13 | Ivan Melendez | Texas | 2022 | 67 | 32 |
| t-17 | Kris Bryant | San Diego | 2013 | 62 | 31 |
| t-17 | Casey Child | Utah | 1997 | 58 | 31 |
| t-17 | J. D. Drew | Florida State | 1997 | 67 | 31 |
| t-17 | John Van Benschoten | Kent State | 2001 | 61 | 31 |
| t-17 | Douglas Moulder | Sam Houston State | 1999 | 59 | 31 |
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