This is a list of all species of fish that are or were known to occur in freshwater habitats of New Zealand. The list includes 63 species as of June 2025. It is based on those currently listed in the New Zealand Threat Classification System. [1]
| Family | Species | Common name | NZTCS | Notes | Image | 
| Anguillidae | Anguilla dieffenbachii | New Zealand longfin eel | Declining |   | |
| Anguillidae | Anguilla australis | Short-finned eel | Not Threatened |   | |
| Anguillidae | Anguilla reinhardtii | Speckled longfin eel/Australian long-finned eel | Coloniser | First confirmed in 1997 to have established in New Zealand. [2] |   | 
| Cheimarrichthyidae | Cheimarrichthys fosteri | Torrentfish/panoko | Declining |   | |
| Cyprinidae | Carassius auratus | Goldfish | Introduced and Naturalised |   | |
| Cyprinidae | Cyprinus carpio | Common carp | Introduced and Naturalised |   | |
| Eleotridae | Gobiomorphus hubbsi | Bluegill bully | Declining |   | |
| Eleotridae | Gobiomorphus alpinus | Tarndale bully | Naturally Uncommon |   | |
| Eleotridae | Gobiomorphus gobioides | Giant bully/tītarakura/tīpokopoko | Naturally Uncommon |   | |
| Eleotridae | Gobiomorphus basalis | Cran's bully | Not Threatened |   | |
| Eleotridae | Gobiomorphus breviceps | Upland bully | Not Threatened |   | |
| Eleotridae | Gobiomorphus cotidianus | Common bully/Toitoi | Not Threatened |   | |
| Eleotridae | Gobiomorphus huttoni | Redfin bully | Not Threatened |   | |
| Galaxiidae | Galaxias cobitinis | Lowland longjaw galaxias | Nationally Critical |   | |
| Galaxiidae | Neochanna burrowsius | Canterbury Mudfish | Nationally Critical |   | |
| Galaxiidae | Galaxias anomalus | Roundhead galaxias | Nationally Endangered |   | |
| Galaxiidae | Galaxias eldoni | Eldon's galaxias | Nationally Endangered |   | |
| Galaxiidae | Galaxias pullus | Dusky galaxias | Nationally Endangered |   | |
| Galaxiidae | Galaxias depressiceps | Flathead galaxias | Nationally Vulnerable |   | |
| Galaxiidae | Galaxias gollumoides | Gollum galaxias | Nationally Vulnerable |   | |
| Galaxiidae | Galaxias macronasus | Bignose galaxias | Nationally Vulnerable |   | |
| Galaxiidae | Galaxias postvectis | Shortjaw kōkopu | Nationally Vulnerable |   | |
| Galaxiidae | Galaxias prognathus | Longjawed galaxias | Nationally Vulnerable |   | |
| Galaxiidae | Neochanna heleios | Northland mudfish | Nationally Vulnerable |   | |
| Galaxiidae | Galaxias argenteus | Giant kōkopu | Declining |   | |
| Galaxiidae | Galaxias brevipinnis | Climbing galaxias/kōaro | Declining |   | |
| Galaxiidae | Galaxias divergens | Dwarf galaxias | Declining |   | |
| Galaxiidae | Galaxias maculatus | Common galaxias/inanga | Declining |   | |
| Galaxiidae | Galaxias vulgaris | Common river galaxias/Canterbury galaxias | Declining |   | |
| Galaxiidae | Neochanna apoda | Brown mudfish | Declining |   | |
| Galaxiidae | Neochanna diversus | Black mudfish | Declining |   | |
| Galaxiidae | Galaxias paucispondylus | Alpine galaxias | Naturally Uncommon |   | |
| Galaxiidae | Neochanna rekohua | Chatham mudfish | Naturally Uncommon |   | |
| Galaxiidae | Galaxias fasciatus | Banded kōkopu | Not Threatened |  | |
| Geotriidae | Geotria australis | Pouched lamprey | Nationally Vulnerable |   | |
| Gobiidae | Gobiopterus semivestitus | Glassgoby | Coloniser | First detected in 2008. [3] | |
| Gobiidae | Parioglossus marginalis | Blackmargin dartfish | Coloniser | Needs saltwater to survive, but tolerates excursions into freshwater streams. [4] |   | 
| Gobiidae | Acentrogobius pflaumii | Striped Sandgoby | Introduced and Naturalised | Can occur in brackish estuaries |   | 
| Gobiidae | Arenigobius bifrenatus | Bridled goby | Introduced and Naturalised | Occurs in estuaries |   | 
| Ictaluridae | Ameiurus nebulosus | Brown bullhead | Introduced and Naturalised |   | |
| Leuciscidae | Leuciscus idus | Orfe | Introduced and Naturalised |  | |
| Leuciscidae | Scardinius erythrophthalmus | Common rudd | Introduced and Naturalised |   | |
| Mugilidae | Aldrichetta forsteri | Yellow-eye mullet | Not Threatened | Common in river estuaries and can travel several kilometers upstream. [5] |   | 
| Mugilidae | Mugil cephalus | Flathead grey mullet | Not Threatened | Marine species but can travel significant distances upstream. [6] |   | 
| Percidae | Perca fluviatilis | European perch | Introduced and Naturalised |   | |
| Poeciliidae | Gambusia affinis | Mosquitofish | Introduced and Naturalised |  | |
| Poeciliidae | Phalloceros caudimaculatus | Dusky millions fish | Introduced and Naturalised |   | |
| Poeciliidae | Poecilia latipinna | Sailfin molly | Introduced and Naturalised |   | |
| Poeciliidae | Poecilia reticulata | Guppy | Introduced and Naturalised |   | |
| Poeciliidae | Xiphophorus hellerii | Green swordtail | Introduced and Naturalised | Only known from Waipahihi Stream near Taupō. Possibly extinct from New Zealand. [7] |   | 
| Retropinnidae | Prototroctes oxyrhynchus | New Zealand Grayling | Extinct | Last sighted in 1929 and was formally declared extinct in 2018. [8] |   | 
| Retropinnidae | Stokellia anisodon | Stokell's smelt | Naturally Uncommon | ||
| Retropinnidae | Retropinna retropinna | New Zealand smelt | Not Threatened |   | |
| Rhombosoleidae | Rhombosolea retiaria | Black flounder/Mohoao | Not Threatened |   | |
| Salmonidae | Oncorhynchus mykiss | Rainbow trout | Introduced and Naturalised |   | |
| Salmonidae | Oncorhynchus nerka | Sockeye salmon | Introduced and Naturalised |   | |
| Salmonidae | Oncorhynchus tshawytscha | Chinook salmon | Introduced and Naturalised |   | |
| Salmonidae | Salmo salar | Atlantic salmon | Introduced and Naturalised |   | |
| Salmonidae | Salmo trutta | Brown trout | Introduced and Naturalised |   | |
| Salmonidae | Salvelinus fontinalis | Brook trout | Introduced and Naturalised |   | |
| Salmonidae | Salvelinus namaycush | Lake trout | Introduced and Naturalised |   | |
| Tincidae | Tinca tinca | Tench | Introduced and Naturalised |   | |
| Tripterygiidae | Forsterygion nigripenne | Estuarine triplefin | Not Threatened | Primarily known from estuaries but can sometimes be found in lower reaches of streams and rivers [9] |   |