Organic geochemistry

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Organic geochemistry is the study of the impacts and processes that organisms have had on the Earth. It is mainly concerned with the composition and mode of origin of organic matter in rocks and in bodies of water. [1] The study of organic geochemistry is traced to the work of Alfred E. Treibs, "the father of organic geochemistry." [2] Treibs first isolated metalloporphyrins from petroleum. This discovery established the biological origin of petroleum, which was previously poorly understood. [3] Metalloporphyrins in general are highly stable organic compounds, and the detailed structures of the extracted derivatives made clear that they originated from chlorophyll.

Contents

Applications

Energy

Petroleum

The relationship between the occurrence of organic compounds in sedimentary deposits and petroleum deposits has long been of interest. [4] Studies of ancient sediments and rock provide insights into the origins and sources of oil and petroleum, as well as the biochemical antecedents of life. Oil spills in particular have been of interest to geochemists in regards to the impact of petroleum and oil on the current geological environment. Following the Exxon Valdez Oil Spill, organic geochemistry knowledge on oil-spill chemistry bloomed with the analyses of samples from the spill. [5]

Geochemists study petroleum-inclusions in geological samples to compare present-day fluid-inclusions to dated samples. This analysis provides insight into the age of the petroleum samples and the surrounding rock. Spectrographic, optical, destructive, and nondestructive methods are used to analyze samples via mass spectrometry or Raman spectroscopy. The discovered differences in samples, such as oil-to-gas ratio or viscosity are typically attributed to the rock source of the sample. Other characteristics typically noted are pressure/volume/temperature properties, sample texture, and sample composition. Complications in analysis arise when the source rock is near or in a water source. [6]

Carbon cycle diagram Carbon cycle diagram-ar.svg
Carbon cycle diagram
Carbon-13 Placement in Isotope Chart where N is number of neutrons and Z is atomic number Carbon-13.svg
Carbon-13 Placement in Isotope Chart where N is number of neutrons and Z is atomic number

Petroleum is also studied via carbon isotope analysis. Carbon isotopes provide insight into the Earth's carbon cycle and geological processes. Geochemists are able to discern the composition of petroleum deposits by examining the ratio of carbon isotopes and comparing this ratio to known values for carbon based structures of which the petroleum could be composed. [7]

Coal

Vast knowledge about coal has been attained since the inception of its use as an energy source. However, modern geochemists are still studying how plant material changes into coal. They have determined coalification results from a selective degradation of plant materials, while other plant material is preserved. Coal macromolecules are usually made up of these degradation-resistant biopolymers contained in algae, spores, and wood. Geochemists have unraveled the mysteries behind coal formation by comparing properties of the biopolymers to properties found in existing coal macromolecules. The analytical methods of Carbon NMR and gas chromatography-mass spectrometry (GC-MS) combined with flash pyrolysis has greatly enhanced the ability of organic geochemists to analyse the minute structural units of coal. [8]

Example of isochron dating diagram and analysis Isochron.jpg
Example of isochron dating diagram and analysis

Further knowledge into the age of coal sediments has been attained via isochron dating of uranium in the coalified samples. Examination of the parent to daughter ratio of uranium isotopes has led to the dating of select samples to the Late Cretaceous Period. [9]

Environmental

Modern organic geochemistry includes studies of recent sediments to understand the carbon cycle, climate change, and ocean processes. In connection with petroleum studies, petroleum-focused geochemists also examine the impact of petroleum on the geological environment. [10] Geochemistry also examines other pollutants in geological systems, such as metabolites formed from the degradation of hydrocarbons. Organic geochemistry analytical techniques, such as GC-MS, allow chemists to determine the intricate effects of organic metabolites and human-derived waste products on the geological environment. [11] Of specific concern are the human-derived pollutants stemming from agricultural work. The use of animal manure, in combination with general municipal and sewage waste management, has changed many physical properties of the agricultural soil involved and the surrounding soils. [12]

Organic geochemistry is also relevant to aqueous environments. Pollutants, their metabolites, and how both enter bodies of water are of particular importance in the field. This organic matter can also be derived from geological processes in or near bodies of water, similarly influencing nearby lifeforms and protein production. Fluorescence spectroscopy has been introduced as a technique to examine organic matter in bodies of water, as dissolved organic matter is typically fluorescent. [13]

Winds disperse vast quantities of dust (red), sea salt (blue), sulphate (white) and black and organic carbon (green) around the world.

The study of organic geochemistry also extends to the atmosphere. Particularly, geochemists in this field study the makeup of insoluble material in the lower atmosphere. They have defined certain consequences of organic aerosols including physiological toxicity, direct and indirect climate forcing, smog, rain acidification, and incorporation into the natural carbon cycle. [14]

Further reading

Related Research Articles

Methane clathrate Methane-water lattice compound

Methane clathrate (CH4·5.75H2O) or (4CH4·23H2O), also called methane hydrate, hydromethane, methane ice, fire ice, natural gas hydrate, or gas hydrate, is a solid clathrate compound (more specifically, a clathrate hydrate) in which a large amount of methane is trapped within a crystal structure of water, forming a solid similar to ice. Originally thought to occur only in the outer regions of the Solar System, where temperatures are low and water ice is common, significant deposits of methane clathrate have been found under sediments on the ocean floors of the Earth. Methane hydrate is formed when hydrogen-bonded water and methane gas come into contact at high pressures and low temperatures in oceans.

Kerogen is solid, insoluble organic matter in sedimentary rocks. Comprising an estimated 1016 tons of carbon, it is the most abundant source of organic compounds on earth, exceeding the total organic content of living matter 10,000-fold. It is insoluble in normal organic solvents and it does not have a specific chemical formula. Upon heating, kerogen converts in part to liquid and gaseous hydrocarbons. Petroleum and natural gas form from kerogen. Kerogen may be classified by its origin: lacustrine (e.g., algal), marine (e.g., planktonic), and terrestrial (e.g., pollen and spores). The name "kerogen" was introduced by the Scottish organic chemist Alexander Crum Brown in 1906, derived from the Greek for "wax birth" (Greek: κηρός "wax" and -gen, γένεση "birth").

Biogeochemical cycle Cycling of substances through and compartments of Earth

In ecology and Earth science, a biogeochemical cycle is a pathway by which a chemical substance is turned over or moves through the biotic (biosphere) and the abiotic compartments of Earth. There are biogeochemical cycles for the chemical elements calcium, carbon, hydrogen, mercury, nitrogen, oxygen, phosphorus, selenium, iron and sulfur; molecular cycles for water and silica; macroscopic cycles such as the rock cycle; as well as human-induced cycles for synthetic compounds such as polychlorinated biphenyl (PCB). In some cycles there are reservoirs where a substance remains or is sequestered for a long period of time.

Isotope geochemistry is an aspect of geology based upon the study of natural variations in the relative abundances of isotopes of various elements. Variations in isotopic abundance are measured by isotope ratio mass spectrometry, and can reveal information about the ages and origins of rock, air or water bodies, or processes of mixing between them.

Petroleum geochemistry is the branch of geochemistry which deals with the application of chemical principles in the study of the origin,generation,migration, accumulation, and alteration of petroleum...(John M. Hunt, 1979). Petroleum is generally considered oil and natural gases having various compounds composed of primarily hydrogen and carbon. They are usually generated from the decomposition and/or thermal maturation of organic matter. The organic matter originated from plants and algae. The organic matter is deposited after the death of the plant in sediments, where after considerable time, heat, and pressure the compounds in the plants and algae are altered to oil, gas, and kerogen. Kerogen can be thought of as the remaining solid material of the plant. The sediment - usually clay and/or calcareous (lime) ooze, hardens during this alteration process into rock i.e. shale and/or limestone. The shale or limestone rock containing the organic matter is called the source rock because it is the source, having generated the petroleum.

Pristane is a natural saturated terpenoid alkane obtained primarily from shark liver oil, from which its name is derived. It is also found in the stomach oil of birds in the order Procellariiformes and in mineral oil and some foods. Pristane and phytane are used in the fields of geology and environmental science as biomarkers to characterize origins and evolution of petroleum hydrocarbons and coal.

Paleolimnology Scientific study of ancient lakes and streams

Paleolimnology is a scientific sub-discipline closely related to both limnology and paleoecology. Paleolimnological studies focus on reconstructing the past environments of inland waters using the geologic record, especially with regard to events such as climatic change, eutrophication, acidification, and internal ontogenic processes.

Cholestane Chemical compound

Cholestane is a saturated tetracyclic triterpene. This carbon-27 biomarker is produced by diagenesis of cholesterol and is one of the most abundant biomarkers in the rock record. Presence of cholestane in environmental samples are commonly interpreted as an indicator of animal life and/or traces of O2, as animals are known for exclusively producing cholesterol, and thus has been used to draw evolutionary relationships between ancient organisms of unknown phylogenetic origin and modern metazoan taxa. Cholestane is made in low abundance by other organisms (e.g., rhodophytes), but because these other organisms produce a variety of sterols it cannot be used as a conclusive indicator of any one taxa. It is often found in analysis of organic compounds in petroleum.

A carbon-to-nitrogen ratio is a ratio of the mass of carbon to the mass of nitrogen in a substance. It can, amongst other things, be used in analysing sediments and compost. A useful application for C/N ratios is as a proxy for paleoclimate research, having different uses whether the sediment cores are terrestrial-based or marine-based. Carbon-to-nitrogen ratios are an indicator for nitrogen limitation of plants and other organisms and can identify whether molecules found in the sediment under study come from land-based or algal plants. Further, they can distinguish between different land-based plants, depending on the type of photosynthesis they undergo. Therefore, the C/N ratio serves as a tool for understanding the sources of sedimentary organic matter, which can lead to information about the ecology, climate, and ocean circulation at different times in Earth’s history.

Phytane is the isoprenoid alkane formed when phytol, a constituent of chlorophyll, loses its hydroxyl group. When phytol loses one carbon atom, it yields pristane. Other sources of phytane and pristane have also been proposed than phytol.

Tarball (oil)

A tarball is a blob of petroleum which has been weathered after floating in the ocean. Tarballs are an aquatic pollutant in most environments, although they can occur naturally and as such are not always associated with oil spills.

<i>Organic Geochemistry</i> Academic journal

Organic Geochemistry is a peer-reviewed scientific journal published by Elsevier covering research on all aspects of organic geochemistry. The current editors-in-chief are John Volkman, Steven Rowland and Erdem Idiz. Organic Geochemistry is the official journal of the European Association of Organic Geochemists. The journal is a hybrid open-access journal, publishing both subscription and open access articles.

Hydrogen isotope biogeochemistry is the scientific study of biological, geological, and chemical processes in the environment using the distribution and relative abundance of hydrogen isotopes. There are two stable isotopes of hydrogen, protium 1H and deuterium 2H, which vary in relative abundance on the order of hundreds of permil. The ratio between these two species can be considered the hydrogen isotopic fingerprint of a substance. Understanding isotopic fingerprints and the sources of fractionation that lead to variation between them can be applied to address a diverse array of questions ranging from ecology and hydrology to geochemistry and paleoclimate reconstructions. Since specialized techniques are required to measure natural hydrogen isotope abundance ratios, the field of hydrogen isotope biogeochemistry provides uniquely specialized tools to more traditional fields like ecology and geochemistry.

John M. Hayes (scientist)

John Michael Hayes ForMemRS was a scientist emeritus at Woods Hole Oceanographic Institution in Woods Hole, Massachusetts.

Crocetane, or 2,6,11,15-tetramethylhexadecane, is an isoprenoid hydrocarbon compound. Unlike its isomer phytane, crocetane has a tail-to-tail linked isoprenoid skeleton. Crocetane has been detected in modern sediments and geological records as a biomarker, often associated with anaerobic methane oxidation.

Dinosterane Chemical compound

Dinosterane is a steroidal alkane, also known as 4α,23,24-trimethylcholestane. It is used in geochemistry as a biomarker, interpreted as an indication of dinoflagellate presence due to its derivative dinosterol high occurrence in extant dinoflagellate species and its rarity in other taxa, although it has been shown to be produced by a single species of marine diatom as well.

Bituminite is an autochthonous maceral that is a part of the liptinite group in lignite, that occurs in petroleum source rocks originating from organic matter such as algae which has undergone alteration or degradation from natural processes such as burial. It occurs as fine-grained groundmass, laminae or elongated structures that appear as veinlets within horizontal sections of lignite and bituminous coals, and also occurs in sedimentary rocks. Its occurrence in sedimentary rocks is typically found surrounding alginite, and parallel along bedding planes. Bituminite is not considered to be bitumen because its properties are different from most bitumens. It is described to have no definite shape or form when present in bedding and can be identified using different kinds of visible and fluorescent lights. There are three types of bituminite: type I, type II and type III, of which type I is the most common. The presence of bituminite in oil shales, other oil source rocks and some coals plays an important factor when determining potential petroleum-source rocks.

24-Norcholestane Chemical compound

24-Norcholestane, a steroid derivative, is used as a biomarker to constrain the source age of sediments and petroleum through the ratio between 24-norcholestane and 27-norcholestane, especially when used with other age diagnostic biomarkers, like oleanane. While the origins of this compound are still unknown, it is thought that they are derived from diatoms due to their identification in diatom rich sediments and environments. In addition, it was found that 24-norcholestane levels increased in correlation with diatom evolution. Another possible source of 24-norcholestane is from dinoflagellates, albeit to a much lower extent.

27-Norcholestane Chemical compound

27-Norcholestane, is a chemical compound with formula C
26
H
46
, that is a steroid derivative. 27-Norcholestane is used as a biomarker to constrain the source age of sediments and petroleum through the ratio between 24-norcholestane and 27-norcholestane, especially when used with other age diagnostic biomarkers, like oleanane.

Ruth E. Blake is an American geophysicist and environmental scientist. She is a professor at Yale University in geology & geophysics, forestry & environmental studies, and chemical & environmental engineering. Blake's work focuses on marine biogeochemical processes, paleoclimate, astrobiology, and stable isotope geochemistry.

References

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  2. Kvenvolden, Keith A. (2006). "Organic geochemistry – A retrospective of its first 70 years". Organic Geochemistry. 37: 1–11. doi:10.1016/j.orggeochem.2005.09.001
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