MDGRAPE-3 is an ultra-high performance petascale supercomputer system developed by the Riken research institute in Japan. It is a special purpose system built for molecular dynamics simulations, especially protein structure prediction. [1]
MDGRAPE-3 consists of 201 units of 24 custom MDGRAPE-3 chips (4,824 total), plus additional dual-core Intel Xeon processors (codename "Dempsey") which serve as host machines.
In June 2006 Riken announced its completion, [2] achieving the petaFLOPS level of floating point arithmetic performance. [2] This was more than three times faster than the 2006 version of the IBM Blue Gene/L system, which then led the TOP500 list of supercomputers at 0.28 petaFLOPS. Because it's not a general-purpose machine capable of running the LINPACK benchmarks, MDGRAPE-3 does not qualify for the TOP500 list.
A supercomputer is a computer with a high level of performance as compared to a general-purpose computer. The performance of a supercomputer is commonly measured in floating-point operations per second (FLOPS) instead of million instructions per second (MIPS). Since 2017, there are supercomputers which can perform over a hundred quadrillion FLOPS. Since November 2017, all of the world's fastest 500 supercomputers run Linux-based operating systems. Additional research is being conducted in China, the United States, the European Union, Taiwan and Japan to build faster, more powerful and technologically superior exascale supercomputers.
In computing, floating point operations per second is a measure of computer performance, useful in fields of scientific computations that require floating-point calculations. For such cases it is a more accurate measure than measuring instructions per second.
Blue Gene is an IBM project aimed at designing supercomputers that can reach operating speeds in the petaFLOPS (PFLOPS) range, with low power consumption.
Cell is a multi-core microprocessor microarchitecture that combines a general-purpose PowerPC core of modest performance with streamlined coprocessing elements which greatly accelerate multimedia and vector processing applications, as well as many other forms of dedicated computation.
Riken is a large scientific research institute in Japan. Founded in 1917, it now has about 3,000 scientists on seven campuses across Japan, including the main site at Wakō, Saitama Prefecture, just outside Tokyo. Riken is a Designated National Research and Development Institute, and was formerly an Independent Administrative Institution. "Riken" is a contraction of the formal name Rikagaku Kenkyūjo (理化学研究所), and its full name in Japanese is Kokuritsu Kenkyū Kaihatsu Hōjin Rikagaku Kenkyūsho (国立研究開発法人理化学研究所) and in English is the Institute of Physical and Chemical Research.
The TOP500 project ranks and details the 500 most powerful non-distributed computer systems in the world. The project was started in 1993 and publishes an updated list of the supercomputers twice a year. The first of these updates always coincides with the International Supercomputing Conference in June, and the second is presented at the ACM/IEEE Supercomputing Conference in November. The project aims to provide a reliable basis for tracking and detecting trends in high-performance computing and bases rankings on HPL, a portable implementation of the high-performance LINPACK benchmark written in Fortran for distributed-memory computers.
The considerable computing capability of the PlayStation 3's Cell microprocessors has raised interest in using multiple, networked PS3s for various tasks that require affordable high-performance computing.
In computing, performance per watt is a measure of the energy efficiency of a particular computer architecture or computer hardware. Literally, it measures the rate of computation that can be delivered by a computer for every watt of power consumed. This rate is typically measured by performance on the LINPACK benchmark when trying to compare between computing systems.
Anton is a massively parallel supercomputer designed and built by D. E. Shaw Research in New York, first running in 2008. It is a special-purpose system for molecular dynamics (MD) simulations of proteins and other biological macromolecules. An Anton machine consists of a substantial number of application-specific integrated circuits (ASICs), interconnected by a specialized high-speed, three-dimensional torus network.
IBM Sequoia is a petascale Blue Gene/Q supercomputer constructed by IBM for the National Nuclear Security Administration as part of the Advanced Simulation and Computing Program (ASC). It was delivered to the Lawrence Livermore National Laboratory (LLNL) in 2011 and was fully deployed in June 2012.
Petascale computing refers to computing systems capable of calculating at least 1015 floating point operations per second (1 petaFLOPS). Petascale computing allowed faster processing of traditional supercomputer applications. The first system to reach this milestone was the IBM Roadrunner in 2008. Petascale supercomputers are planned to be succeeded by exascale computers.
Tianhe-I, Tianhe-1, or TH-1 is a supercomputer capable of an Rmax of 2.5 petaFLOPS. Located at the National Supercomputing Center of Tianjin, China, it was the fastest computer in the world from October 2010 to June 2011 and is one of the few petascale supercomputers in the world.
Exascale computing refers to computing systems capable of calculating at least 1018 floating point operations per second (1 exaFLOPS). The terminology generally refers to the performance of supercomputer systems and no single machine has reached this goal as of June 2020; there are systems being designed to reach the milestone of one exaFLOPS. In April 2020 the distributed computing Folding@home network attained one exaFLOPS of computing performance.
The K computer – named for the Japanese word/numeral "kei" (京), meaning 10 quadrillion (1016) – was a supercomputer manufactured by Fujitsu, installed at the Riken Advanced Institute for Computational Science campus in Kobe, Hyōgo Prefecture, Japan. The K computer was based on a distributed memory architecture with over 80,000 compute nodes. It was used for a variety of applications, including climate research, disaster prevention and medical research. The K computer's operating system was based on the Linux kernel, with additional drivers designed to make use of the computer's hardware.
Japan operates a number of centers for supercomputing which hold world records in speed, with the K computer becoming the world's fastest in June 2011.
Approaches to supercomputer architecture have taken dramatic turns since the earliest systems were introduced in the 1960s. Early supercomputer architectures pioneered by Seymour Cray relied on compact innovative designs and local parallelism to achieve superior computational peak performance. However, in time the demand for increased computational power ushered in the age of massively parallel systems.
Titan or OLCF-3 was a supercomputer built by Cray at Oak Ridge National Laboratory for use in a variety of science projects. Titan was an upgrade of Jaguar, a previous supercomputer at Oak Ridge, that uses graphics processing units (GPUs) in addition to conventional central processing units (CPUs). Titan was the first such hybrid to perform over 10 petaFLOPS. The upgrade began in October 2011, commenced stability testing in October 2012 and it became available to researchers in early 2013. The initial cost of the upgrade was US$60 million, funded primarily by the United States Department of Energy.
The Cray XC40 is a massively parallel multiprocessor supercomputer manufactured by Cray. It consists of Intel Haswell Xeon processors, with optional Nvidia Tesla or Intel Xeon Phi accelerators, connected together by Cray's proprietary "Aries" interconnect, stored in air-cooled or liquid-cooled cabinets. The XC series supercomputers are available with the Cray DataWarp applications I/O accelerator technology.
MDGRAPE-4 is a supercomputer under development at the RIKEN Quantitative Biology Center (QBiC) in Suita, Osaka, Japan.
Fugaku(Japanese: 富岳) — named after an alternative name for Mount Fuji — is a petascale supercomputer at the RIKEN Center for Computational Science in Kobe, Japan. It started development in 2014 as the successor to the K computer, and it is scheduled to start operating in 2021, although parts of the computer were put into operation in June 2020. It is the fastest supercomputer in the world in the TOP500 list.