Uberon

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Uberon
Database.png
Content
DescriptionUberon, an integrative multi-species anatomy ontology.
Data types
captured
Anatomical Structures
Organisms Metazoa
Contact
Primary citationMungall & al. (2012) [1]
Release date2012
Access
Data format OWL and OBO
Website http://obophenotype.github.io/uberon/
Download URL http://purl.obolibrary.org/obo/uberon/merged.owl
Sparql endpoint http://sparql.hegroup.org/sparql
Miscellaneous
License open

The Uber-anatomy ontology (Uberon) is a comparative anatomy ontology representing a variety of structures found in animals, such as lungs, muscles, bones, feathers and fins. These structures are connected to other structures via relationships such as part-of and develops-from. [1] One of the uses of this ontology is to integrate data from different biological databases, and other species-specific ontologies such as the Foundational Model of Anatomy. [2] [3] [4]

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References

  1. 1 2 Mungall, Christopher J; Torniai Carlo; Gkoutos Georgios V; Lewis Suzanna E; Haendel Melissa A (2012). "Uberon, an integrative multi-species anatomy ontology". Genome Biol. England. 13 (1): R5. doi: 10.1186/gb-2012-13-1-r5 . PMC   3334586 . PMID   22293552.
  2. Washington, N. L.; Haendel, M. A.; Mungall, C. J.; Ashburner, M.; Westerfield, M.; Lewis, S. E. (2009). Buetow, Kenneth H (ed.). "Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation". PLOS Biology. 7 (11): e1000247. doi: 10.1371/journal.pbio.1000247 . PMC   2774506 . PMID   19956802.
  3. Hoehndorf, R.; Schofield, P. N.; Gkoutos, G. V. (2011). "PhenomeNET: A whole-phenome approach to disease gene discovery". Nucleic Acids Research. 39 (18): e119. doi:10.1093/nar/gkr538. PMC   3185433 . PMID   21737429.
  4. Chen, C. K.; Mungall, C. J.; Gkoutos, G. V.; Doelken, S. C.; Köhler, S.; Ruef, B. J.; Smith, C.; Westerfield, M.; Robinson, P. N.; Lewis, S. E.; Schofield, P. N.; Smedley, D. (2012). "MouseFinder: Candidate disease genes from mouse phenotype data". Human Mutation. 33 (5): 858–866. doi:10.1002/humu.22051. PMC   3327758 . PMID   22331800.