Vts1

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Vts1
Vts1P SRE Recognition SAM domain.jpg
Crystal structure of Vts1p–SRE complex. [1]
Identifiers
SymbolVts1
Pfam PF07647
SCOP2 1b0x / SCOPe / SUPFAM
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary

Vts1 is a post-transcriptional regulator that has RNA-binding Sterile alpha motif (SAM) domain. [2] [3] The protein is found in Saccharomyces cerevisiae and several eukaryotes. In Saccharomyces the Vts1 impacts vesicular transport and sporulation. [4] [5]

Interactions

Secondary structure motif of RNA region interacting with Vts1 VTS1 target RNA.svg
Secondary structure motif of RNA region interacting with Vts1

Protein-protein interactions through SAM domains participate in different regulatory activities such as signal transduction. Proteins having such domains were also shown to recognize and interact with RNA structures of similar shape to the Smaug response element (SRE). [6] Vts1 binds to RNA targets that have CUGGC on hairpin loops. [7]

Related Research Articles

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References

  1. Johnson PE, Donaldson LW (February 2006). "RNA recognition by the Vts1p SAM domain". Nature Structural & Molecular Biology. 13 (2): 177–178. doi:10.1038/nsmb1039. PMID   16429155. S2CID   9561521.
  2. Schultz J, Ponting CP, Hofmann K, Bork P (January 1997). "SAM as a protein interaction domain involved in developmental regulation". Protein Science. 6 (1): 249–253. doi:10.1002/pro.5560060128. PMC   2143507 . PMID   9007998.
  3. Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G, Allain FH (February 2006). "Shape-specific recognition in the structure of the Vts1p SAM domain with RNA". Nature Structural & Molecular Biology. 13 (2): 160–167. doi:10.1038/nsmb1038. PMID   16429156. S2CID   15416866.
  4. Deutschbauer AM, Williams RM, Chu AM, Davis RW (November 2002). "Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae". Proceedings of the National Academy of Sciences of the United States of America. 99 (24): 15530–15535. Bibcode:2002PNAS...9915530D. doi: 10.1073/pnas.202604399 . PMC   137751 . PMID   12432101.
  5. Dilcher M, Köhler B, von Mollard GF (September 2001). "Genetic interactions with the yeast Q-SNARE VTI1 reveal novel functions for the R-SNARE YKT6". The Journal of Biological Chemistry. 276 (37): 34537–34544. doi: 10.1074/jbc.M101551200 . PMID   11445562.
  6. Hall TM (September 2003). "SAM breaks its stereotype". Nature Structural Biology. 10 (9): 677–679. doi:10.1038/nsb0903-677. PMID   12942139. S2CID   9072100.
  7. Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G, Allain FH (February 2006). "Shape-specific recognition in the structure of the Vts1p SAM domain with RNA". Nature Structural & Molecular Biology. 13 (2): 160–167. doi:10.1038/nsmb1038. PMID   16429156. S2CID   15416866.