Plant evolution

Last updated
Cladogram of plant evolution Plant Diversity (2).svg
Cladogram of plant evolution

Plant evolution is the subset of evolutionary phenomena that concern plants. Evolutionary phenomena are characteristics of populations that are described by averages, medians, distributions, and other statistical methods. This distinguishes plant evolution from plant development, a branch of developmental biology which concerns the changes that individuals go through in their lives. The study of plant evolution attempts to explain how the present diversity of plants arose over geologic time. It includes the study of genetic change and the consequent variation that often results in speciation, one of the most important types of radiation into taxonomic groups called clades. A description of radiation is called a phylogeny and is often represented by type of diagram called a phylogenetic tree.

Contents

Differences between plant and animal physiology and reproduction cause minor differences in how they evolve.

One major difference is the totipotent nature of plant cells, allowing them to reproduce asexually much more easily than most animals. They are also capable of polyploidy – where more than two chromosome sets are inherited from the parents. This allows relatively fast bursts of evolution to occur, for example by the effect of gene duplication. The long periods of dormancy that seed plants can employ also makes them less vulnerable to extinction, as they can "sit out" the tough periods and wait until more clement times to leap back to life. [1]

The effect of these differences is most profoundly seen during extinction events. These events, which wiped out between 6 and 62% of terrestrial animal families, had "negligible" effect on plant families. [2] However, the ecosystem structure is significantly rearranged, with the abundances and distributions of different groups of plants changing profoundly. [2] These effects are perhaps due to the higher diversity within families, as extinction – which was common at the species level – was very selective. For example, wind-pollinated species survived better than insect-pollinated taxa, and specialised species generally lost out. [2] In general, the surviving taxa were rare before the extinction, suggesting that they were generalists who were poor competitors when times were easy, but prospered when specialised groups became extinct and left ecological niches vacant. [2]

During embryogenesis, plants and animals pass through a phylotypic stage that evolved independently [3] and that causes a developmental constraint limiting morphological diversification. [4] [5] [6] [7]

Polyploidy

Speciation via polyploidy: A diploid cell undergoes failed meiosis, producing diploid gametes, which self-fertilize to produce a tetraploid zygote. Polyploidization.svg
Speciation via polyploidy: A diploid cell undergoes failed meiosis, producing diploid gametes, which self-fertilize to produce a tetraploid zygote.

Polyploidy is pervasive in plants and some estimates suggest that 30–80% of living plant species are polyploid, and many lineages show evidence of ancient polyploidy (paleopolyploidy) in their genomes. [8] [9] [10] Huge explosions in angiosperm species diversity appear to have coincided with ancient genome duplications shared by many species. [11] 15% of angiosperm and 31% of fern speciation events are accompanied by ploidy increase. [12] Most polyploids display heterosis relative to their parental species, and may display novel variation or morphologies that may contribute to the processes of speciation and eco-niche exploitation. [9] [13] The mechanisms leading to novel variation in newly formed allopolyploids may include gene dosage effects (resulting from more numerous copies of genome content), the reunion of divergent gene regulatory hierarchies, chromosomal rearrangements, and epigenetic remodeling, all of which affect gene content and/or expression levels. [14] [15] [16] Many of these rapid changes may contribute to reproductive isolation and speciation.

All eukaryotes probably have experienced a polyploidy event at some point in their evolutionary history. See paleopolyploidy. In many cases, these events can be inferred only through comparing sequenced genomes. Angiosperms have paleopolyploidy in their ancestry. Unexpected ancient genome duplications have recently been confirmed in mustard weed/thale cress ( Arabidopsis thaliana ) and rice ( Oryza sativa ).

Photosynthesis

Plant cells with visible chloroplasts (from a moss, Plagiomnium affine) Plagiomnium affine laminazellen.jpeg
Plant cells with visible chloroplasts (from a moss, Plagiomnium affine )

Cyanobacteria and the evolution of photosynthesis

Cyanobacteria remained principal primary producers throughout the Proterozoic Eon (2500–543 Ma), in part because the redox structure of the oceans favored photoautotrophs capable of nitrogen fixation. [ citation needed ] Green algae joined blue-greens as major primary producers on continental shelves near the end of the Proterozoic, but only with the Mesozoic (251–65 Ma) radiations of dinoflagellates, coccolithophorids, and diatoms did primary production in marine shelf waters take modern form. Cyanobacteria remain critical to marine ecosystems as primary producers in oceanic gyres, as agents of biological nitrogen fixation, and, in modified form, as the plastids of marine algae. [17]

Symbiosis and the origin of chloroplasts

Chloroplasts have many similarities with cyanobacteria, including a circular chromosome, prokaryotic-type ribosomes, and similar proteins in the photosynthetic reaction center. [18] [19] The endosymbiotic theory suggests that photosynthetic bacteria were acquired (by endocytosis) by early eukaryotic cells to form the first plant cells. Therefore, chloroplasts may be photosynthetic bacteria that adapted to life inside plant cells. Like mitochondria, chloroplasts still possess their own DNA, separate from the nuclear DNA of their plant host cells and the genes in this chloroplast DNA resemble those in cyanobacteria. [20] DNA in chloroplasts codes for redox proteins such as photosynthetic reaction centers. The CoRR hypothesis proposes that this Co-location is required for Redox Regulation.

Evolution of plant transcriptional regulation

Transcription factors and transcriptional regulatory networks play key roles in plant development and stress responses, as well as their evolution. During plant landing, many novel transcription factor families emerged and are preferentially wired into the networks of multicellular development, reproduction, and organ development, contributing to more complex morphogenesis of land plants. [21]

See also

Related Research Articles

<span class="mw-page-title-main">Chloroplast</span> Plant organelle that conducts photosynthesis

A chloroplast is a type of membrane-bound organelle known as a plastid that conducts photosynthesis mostly in plant and algal cells. The photosynthetic pigment chlorophyll captures the energy from sunlight, converts it, and stores it in the energy-storage molecules ATP and NADPH while freeing oxygen from water in the cells. The ATP and NADPH is then used to make organic molecules from carbon dioxide in a process known as the Calvin cycle. Chloroplasts carry out a number of other functions, including fatty acid synthesis, amino acid synthesis, and the immune response in plants. The number of chloroplasts per cell varies from one, in unicellular algae, up to 100 in plants like Arabidopsis and wheat.

Microevolution is the change in allele frequencies that occurs over time within a population. This change is due to four different processes: mutation, selection, gene flow and genetic drift. This change happens over a relatively short amount of time compared to the changes termed macroevolution.

<span class="mw-page-title-main">Symbiogenesis</span> Evolutionary theory holding that eukaryotic organelles evolved through symbiosis with prokaryotes

Symbiogenesis is the leading evolutionary theory of the origin of eukaryotic cells from prokaryotic organisms. The theory holds that mitochondria, plastids such as chloroplasts, and possibly other organelles of eukaryotic cells are descended from formerly free-living prokaryotes taken one inside the other in endosymbiosis. Mitochondria appear to be phylogenetically related to Rickettsiales bacteria, while chloroplasts are thought to be related to cyanobacteria.

<span class="mw-page-title-main">Polyploidy</span> Condition where cells of an organism have more than two paired sets of chromosomes

Polyploidy is a condition in which the cells of an organism have more than one pair of (homologous) chromosomes. Most species whose cells have nuclei (eukaryotes) are diploid, meaning they have two complete sets of chromosomes, one from each of two parents; each set contains the same number of chromosomes, and the chromosomes are joined in pairs of homologous chromosomes. However, some organisms are polyploid. Polyploidy is especially common in plants. Most eukaryotes have diploid somatic cells, but produce haploid gametes by meiosis. A monoploid has only one set of chromosomes, and the term is usually only applied to cells or organisms that are normally diploid. Males of bees and other Hymenoptera, for example, are monoploid. Unlike animals, plants and multicellular algae have life cycles with two alternating multicellular generations. The gametophyte generation is haploid, and produces gametes by mitosis; the sporophyte generation is diploid and produces spores by meiosis.

<span class="mw-page-title-main">Plastid</span> Plant cell organelles that perform photosynthesis and store starch

The plastid is a membrane-bound organelle found in the cells of plants, algae, and some other eukaryotic organisms. They are considered to be intracellular endosymbiotic cyanobacteria. Examples include chloroplasts, chromoplasts, and leucoplasts.

<span class="mw-page-title-main">Thylakoid</span> Membrane enclosed compartments in chloroplasts and cyanobacteria

Thylakoids are membrane-bound compartments inside chloroplasts and cyanobacteria. They are the site of the light-dependent reactions of photosynthesis. Thylakoids consist of a thylakoid membrane surrounding a thylakoid lumen. Chloroplast thylakoids frequently form stacks of disks referred to as grana. Grana are connected by intergranal or stromal thylakoids, which join granum stacks together as a single functional compartment.

Endoreduplication is replication of the nuclear genome in the absence of mitosis, which leads to elevated nuclear gene content and polyploidy. Endoreplication can be understood simply as a variant form of the mitotic cell cycle (G1-S-G2-M) in which mitosis is circumvented entirely, due to modulation of cyclin-dependent kinase (CDK) activity. Examples of endoreplication characterized in arthropod, mammalian, and plant species suggest that it is a universal developmental mechanism responsible for the differentiation and morphogenesis of cell types that fulfill an array of biological functions. While endoreplication is often limited to specific cell types in animals, it is considerably more widespread in plants, such that polyploidy can be detected in the majority of plant tissues.

<span class="mw-page-title-main">Paleopolyploidy</span> State of having undergone whole genome duplication in deep evolutionary time

Paleopolyploidy is the result of genome duplications which occurred at least several million years ago (MYA). Such an event could either double the genome of a single species (autopolyploidy) or combine those of two species (allopolyploidy). Because of functional redundancy, genes are rapidly silenced or lost from the duplicated genomes. Most paleopolyploids, through evolutionary time, have lost their polyploid status through a process called diploidization, and are currently considered diploids, e.g., baker's yeast, Arabidopsis thaliana, and perhaps humans.

<span class="mw-page-title-main">Archaeplastida</span> Clade of eukaryotes containing land plants and some algae

The Archaeplastida are a major group of eukaryotes, comprising the photoautotrophic red algae (Rhodophyta), green algae, land plants, and the minor group glaucophytes. It also includes the non-photosynthetic lineage Rhodelphidia, a predatorial (eukaryotrophic) flagellate that is sister to the Rhodophyta, and probably the microscopic picozoans. The Archaeplastida have chloroplasts that are surrounded by two membranes, suggesting that they were acquired directly through a single endosymbiosis event by feeding on a cyanobacterium. All other groups which have chloroplasts, besides the amoeboid genus Paulinella, have chloroplasts surrounded by three or four membranes, suggesting they were acquired secondarily from red or green algae. Unlike red and green algae, glaucophytes have never been involved in secondary endosymbiosis events.

Evolutionary developmental biology (evo-devo) is the study of developmental programs and patterns from an evolutionary perspective. It seeks to understand the various influences shaping the form and nature of life on the planet. Evo-devo arose as a separate branch of science rather recently. An early sign of this occurred in 1999.

<i>Paulinella</i> Genus of single-celled organisms

Paulinella is a genus of at least eleven species including both freshwater and marine amoeboids. Like many members of euglyphids it is covered by rows of siliceous scales, and use filose pseudopods to crawl over the substrate of the benthic zone.

The CoRR hypothesis states that the location of genetic information in cytoplasmic organelles permits regulation of its expression by the reduction-oxidation ("redox") state of its gene products.

<i>Guillardia</i> Genus of single-celled organisms

Guillardia is a genus of marine biflagellate cryptomonad algae with a plastid obtained through secondary endosymbiosis of a red alga.

<span class="mw-page-title-main">Chloroplast DNA</span> DNA located in cellular organelles called chloroplasts

Chloroplast DNA (cpDNA) is the DNA located in chloroplasts, which are photosynthetic organelles located within the cells of some eukaryotic organisms. Chloroplasts, like other types of plastid, contain a genome separate from that in the cell nucleus. The existence of chloroplast DNA was identified biochemically in 1959, and confirmed by electron microscopy in 1962. The discoveries that the chloroplast contains ribosomes and performs protein synthesis revealed that the chloroplast is genetically semi-autonomous. The first complete chloroplast genome sequences were published in 1986, Nicotiana tabacum (tobacco) by Sugiura and colleagues and Marchantia polymorpha (liverwort) by Ozeki et al. Since then, a great number of chloroplast DNAs from various species have been sequenced.

<span class="mw-page-title-main">Leslie D. Gottlieb</span> American biologist

Leslie David Gottlieb (1936–2012) was a United States biologist described by the Botanical Society of America as "one of the most influential plant evolutionary biologists over the past several decades". He was employed at the University of California, Davis for 34 years, and published widely. In addition to his primary work in plant genetics, Gottlieb was an advocate for rare and endangered plant conservation.

The evolution of photosynthesis refers to the origin and subsequent evolution of photosynthesis, the process by which light energy is used to assemble sugars from carbon dioxide and a hydrogen and electron source such as water. The process of photosynthesis was discovered by Jan Ingenhousz, a Dutch-born British physician and scientist, first publishing about it in 1779.

In Embryology a phylotypic stage or phylotypic period is a particular developmental stage or developmental period during mid-embryogenesis where embryos of related species within a phylum express the highest degree of morphological and molecular resemblance. Recent molecular studies in various plant and animal species were able to quantify the expression of genes covering crucial stages of embryo development and found that during the morphologically defined phylotypic period the evolutionary oldest genes, genes with similar temporal expression patterns, and genes under strongest purifying selection are most active throughout the phylotypic period.

Diploidization is the process of converting a polyploid genome back into a diploid one. Polyploidy is a product of whole genome duplication (WGD) and is followed by diploidization as a result of genome shock. The plant kingdom has undergone multiple events of polyploidization followed by diploidization in both ancient and recent lineages. It has also been hypothesized that vertebrate genomes have gone through two rounds of paleopolyploidy. The mechanisms of diploidization are poorly understood but patterns of chromosomal loss and evolution of novel genes are observed in the process.

A plastid is a membrane-bound organelle found in plants, algae and other eukaryotic organisms that contribute to the production of pigment molecules. Most plastids are photosynthetic, thus leading to color production and energy storage or production. There are many types of plastids in plants alone, but all plastids can be separated based on the number of times they have undergone endosymbiotic events. Currently there are three types of plastids; primary, secondary and tertiary. Endosymbiosis is reputed to have led to the evolution of eukaryotic organisms today, although the timeline is highly debated.

References

  1. Willis, Charles G.; Baskin, Carol C.; Baskin, Jerry M.; Auld, Josh R.; Venable, D. Lawrence; Cavender‐Bares, Jeannine; Donohue, Kathleen; Rubio de Casas, Rafael; The NESCent Germination Working Group (July 2014). "The evolution of seed dormancy: environmental cues, evolutionary hubs, and diversification of the seed plants". New Phytologist. 203 (1): 300–309. doi: 10.1111/nph.12782 . ISSN   0028-646X. PMID   24684268.
  2. 1 2 3 4 McElwain, J.C.; Punyasena, S.W. (2007). "Mass extinction events and the plant fossil record". Trends in Ecology & Evolution. 22 (10): 548–557. doi:10.1016/j.tree.2007.09.003. PMID   17919771.
  3. Drost, Hajk-Georg; Janitza, Philipp; Grosse, Ivo; Quint, Marcel (2017). "Cross-kingdom comparison of the developmental hourglass". Current Opinion in Genetics & Development. 45: 69–75. doi: 10.1016/j.gde.2017.03.003 . PMID   28347942.
  4. Irie, Naoki; Kuratani, Shigeru (2011-03-22). "Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis". Nature Communications. 2: 248. Bibcode:2011NatCo...2..248I. doi:10.1038/ncomms1248. ISSN   2041-1723. PMC   3109953 . PMID   21427719.
  5. Domazet-Lošo, Tomislav; Tautz, Diethard (2010-12-09). "A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns". Nature. 468 (7325): 815–818. Bibcode:2010Natur.468..815D. doi:10.1038/nature09632. ISSN   0028-0836. PMID   21150997. S2CID   1417664.
  6. Quint, Marcel; Drost, Hajk-Georg; Gabel, Alexander; Ullrich, Kristian Karsten; Bönn, Markus; Grosse, Ivo (2012-10-04). "A transcriptomic hourglass in plant embryogenesis". Nature. 490 (7418): 98–101. Bibcode:2012Natur.490...98Q. doi:10.1038/nature11394. ISSN   0028-0836. PMID   22951968. S2CID   4404460.
  7. Drost, Hajk-Georg; Gabel, Alexander; Grosse, Ivo; Quint, Marcel (2015-05-01). "Evidence for Active Maintenance of Phylotranscriptomic Hourglass Patterns in Animal and Plant Embryogenesis". Molecular Biology and Evolution. 32 (5): 1221–1231. doi:10.1093/molbev/msv012. ISSN   0737-4038. PMC   4408408 . PMID   25631928.
  8. Meyers LA, Levin DA (June 2006). "On the abundance of polyploids in flowering plants". Evolution. 60 (6): 1198–206. doi: 10.1111/j.0014-3820.2006.tb01198.x . PMID   16892970. S2CID   43039505.
  9. 1 2 Rieseberg LH, Willis JH (August 2007). "Plant speciation". Science. 317 (5840): 910–4. Bibcode:2007Sci...317..910R. doi:10.1126/science.1137729. PMC   2442920 . PMID   17702935.
  10. Otto SP (November 2007). "The evolutionary consequences of polyploidy". Cell. 131 (3): 452–62. doi: 10.1016/j.cell.2007.10.022 . PMID   17981114. S2CID   10054182.
  11. de Bodt et al. 2005
  12. Wood TE, Takebayashi N, Barker MS, Mayrose I, Greenspoon PB, Rieseberg LH (August 2009). "The frequency of polyploid speciation in vascular plants". Proc. Natl. Acad. Sci. U.S.A. 106 (33): 13875–9. Bibcode:2009PNAS..10613875W. doi: 10.1073/pnas.0811575106 . PMC   2728988 . PMID   19667210.
  13. Comai L (November 2005). "The advantages and disadvantages of being polyploid". Nat. Rev. Genet. 6 (11): 836–46. doi:10.1038/nrg1711. PMID   16304599. S2CID   3329282.
  14. Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA (March 2003). "Understanding mechanisms of novel gene expression in polyploids". Trends Genet. 19 (3): 141–7. doi:10.1016/S0168-9525(03)00015-5. PMID   12615008.
  15. Chen ZJ, Ni Z (March 2006). "Mechanisms of genomic rearrangements and gene expression changes in plant polyploids". BioEssays. 28 (3): 240–52. doi:10.1002/bies.20374. PMC   1986666 . PMID   16479580.
  16. Chen ZJ (2007). "Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids". Annu Rev Plant Biol. 58: 377–406. doi:10.1146/annurev.arplant.58.032806.103835. PMC   1949485 . PMID   17280525.
  17. Herrero A and Flores E (editor). (2008). The Cyanobacteria: Molecular Biology, Genomics and Evolution (1st ed.). Caister Academic Press. ISBN   978-1-904455-15-8.{{cite book}}: |author= has generic name (help)
  18. Douglas SE (1998). "Plastid evolution: origins, diversity, trends". Curr. Opin. Genet. Dev. 8 (6): 655–61. doi:10.1016/S0959-437X(98)80033-6. PMID   9914199.
  19. Reyes-Prieto A, Weber AP, Bhattacharya D (2007). "The origin and establishment of the plastid in algae and plants". Annu. Rev. Genet. 41: 147–68. doi:10.1146/annurev.genet.41.110306.130134. PMID   17600460.
  20. Raven JA, Allen JF (2003). "Genomics and chloroplast evolution: what did cyanobacteria do for plants?". Genome Biol. 4 (3): 209. doi: 10.1186/gb-2003-4-3-209 . PMC   153454 . PMID   12620099.
  21. Jin JP; et al. (July 2015). "An Arabidopsis transcriptional regulatory map reveals distinct functional and evolutionary features of novel transcription factors". Molecular Biology and Evolution. 32 (7): 1767–1773. doi:10.1093/molbev/msv058. PMC   4476157 . PMID   25750178.