Mark Achtman

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Mark Achtman

FRS
Professor Mark Achtman FRS.jpg
Mark Achtman in 2015, portrait via the Royal Society
Alma mater
Awards
Scientific career
Fields
Institutions
Thesis A Genetic Study of the F-Factor  (1969)
Website www2.warwick.ac.uk/fac/med/staff/machtman

Mark Achtman FRS [1] is Professor of Bacterial Population Genetics at Warwick Medical School, part of the University of Warwick in the UK. [2] [3] [4] [5]

Contents

Education

Achtman was educated at the University of Manitoba where he was awarded a Master of Science degree in 1965 for research on hemagglutination in adenovirus. [6] He went on to complete a PhD on bacterial fertility factor at the University of California, Berkeley in 1969. [7] [8]

Research

Achtman's research interests are in the population genetics of pathogenic bacteria such as Vibrio cholerae , [9] Salmonella , [10] [11] Yersinia pestis , [12] [13] Neisseria meningitidis , [14] Escherichia coli , [8] Helicobacter pylori , [15] and Bordetella . [16] Achtman was one of the inventors of multilocus sequence typing. [17] His research has been funded by the Biotechnology and Biological Sciences Research Council (BBSRC) and Medical Research Council (MRC). [18]

Awards and honours

Achtman was elected a Fellow of the Royal Society (FRS) in 2015. His nomination reads: [1]

Mark Achtman co-pioneered the development of bacterial population genetics and carried out influential studies characterising strains associated with epidemics of meningococcal disease in Africa. He has undertaken remarkable and highly innovative studies on the human gut pathogen, Helicobacter pylori, showing its ancient association with humans and the ability of genetic studies of this pathogen to complement linguistic and human genetic studies to trace the ancient migrations of its human host. He has also carried out elegant and incisive genetic studies of Yersinia pestis to explore the origins and spread of plague pandemics.

Related Research Articles

<i>Yersinia pestis</i> Species of bacteria, cause of plague

Yersinia pestis is a gram-negative, non-motile, coccobacillus bacterium without spores that is related to both Yersinia enterocolitica and Yersinia pseudotuberculosis, the pathogen from which Y. pestis evolved and responsible for the Far East scarlet-like fever. It is a facultative anaerobic organism that can infect humans via the Oriental rat flea. It causes the disease plague, which caused the Plague of Justinian and the Black Death, the deadliest pandemic in recorded history. Plague takes three main forms: pneumonic, septicemic, and bubonic. Yersinia pestis is a parasite of its host, the rat flea, which is also a parasite of rats, hence Y. pestis is a hyperparasite.

<i>Salmonella</i> Genus of prokaryotes

Salmonella is a genus of rod-shaped (bacillus) gram-negative bacteria of the family Enterobacteriaceae. The two known species of Salmonella are Salmonella enterica and Salmonella bongori. S. enterica is the type species and is further divided into six subspecies that include over 2,600 serotypes. Salmonella was named after Daniel Elmer Salmon (1850–1914), an American veterinary surgeon.

<i>Helicobacter pylori</i> Species of bacteria

Helicobacter pylori, previously known as Campylobacter pylori, is a gram-negative, flagellated, helical bacterium. Mutants can have a rod or curved rod shape, and these are less effective. Its helical body is thought to have evolved in order to penetrate the mucous lining of the stomach, helped by its flagella, and thereby establish infection. The bacterium was first identified as the causal agent of gastric ulcers in 1983 by the Australian doctors Barry Marshall and Robin Warren.

<i>Helicobacter</i> Genus of bacteria

Helicobacter is a genus of gram-negative bacteria possessing a characteristic helical shape. They were initially considered to be members of the genus Campylobacter, but in 1989, Goodwin et al. published sufficient reasons to justify the new genus name Helicobacter. The genus Helicobacter contains about 35 species.

<i>Salmonella enterica</i> Species of bacterium

Salmonella enterica is a rod-shaped, flagellate, facultative anaerobic, Gram-negative bacterium and a species of the genus Salmonella. It is divided into six subspecies, arizonae (IIIa), diarizonae (IIIb), houtenae (IV), salamae (II), indica (VI), and enterica (I). A number of its serovars are serious human pathogens; many of them are serovars of Salmonella enterica subsp. enterica.

Flagellins are a family of proteins present in flagellated bacteria which arrange themselves in a hollow cylinder to form the filament in a bacterial flagellum. Flagellin has a mass on average of about 40,000 daltons. Flagellins are the principal component of bacterial flagella that have a crucial role in bacterial motility.

Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci, using DNA sequences of internal fragments of multiple housekeeping genes to characterize isolates of microbial species.

Carcinogenesis, also called oncogenesis or tumorigenesis, is the formation of a cancer, whereby normal cells are transformed into cancer cells. The process is characterized by changes at the cellular, genetic, and epigenetic levels and abnormal cell division. Cell division is a physiological process that occurs in almost all tissues and under a variety of circumstances. Normally, the balance between proliferation and programmed cell death, in the form of apoptosis, is maintained to ensure the integrity of tissues and organs. According to the prevailing accepted theory of carcinogenesis, the somatic mutation theory, mutations in DNA and epimutations that lead to cancer disrupt these orderly processes by interfering with the programming regulating the processes, upsetting the normal balance between proliferation and cell death. This results in uncontrolled cell division and the evolution of those cells by natural selection in the body. Only certain mutations lead to cancer whereas the majority of mutations do not.

Recombineering is a genetic and molecular biology technique based on homologous recombination systems, as opposed to the older/more common method of using restriction enzymes and ligases to combine DNA sequences in a specified order. Recombineering is widely used for bacterial genetics, in the generation of target vectors for making a conditional mouse knockout, and for modifying DNA of any source often contained on a bacterial artificial chromosome (BAC), among other applications.

<span class="mw-page-title-main">Roxana Moslehi</span> Genetic epidemiologist

Roxana Moslehi is an Iranian-born genetic epidemiologist.

The AB5 toxins are six-component protein complexes secreted by certain pathogenic bacteria known to cause human diseases such as cholera, dysentery, and hemolytic–uremic syndrome. One component is known as the A subunit, and the remaining five components are B subunits. All of these toxins share a similar structure and mechanism for entering targeted host cells. The B subunit is responsible for binding to receptors to open up a pathway for the A subunit to enter the cell. The A subunit is then able to use its catalytic machinery to take over the host cell's regular functions.

Rauchvirus is a genus of viruses in the order Caudovirales, in the family Podoviridae. Bacteria serve as natural hosts. The genus contains only one species: Bordetella virus BPP1.

<span class="mw-page-title-main">Infectious causes of cancer</span>

Estimates place the worldwide risk of cancers from infectious causes at 16.1%. Viral infections are risk factors for cervical cancer, 80% of liver cancers, and 15–20% of the other cancers. This proportion varies in different regions of the world from a high of 32.7% in Sub-Saharan Africa to 3.3% in Australia and New Zealand.

<span class="mw-page-title-main">Gordon Dougan</span>

Gordon Dougan is a Professor in the Department of Medicine at the University of Cambridge and head of pathogen research and a member of the board of management at the Wellcome Sanger Institute in Cambridge, United Kingdom. He is also a Fellow of Wolfson College, Cambridge. During his career, Dougan has pioneered work on enteric diseases and been heavily involved in the movement to improve vaccine usage in developing countries. In this regard he was recently voted as one of the top ten most influential people in the vaccine world by people working in the area.

Helicobacter acinonychis is a bacterium in the Helicobacteraceae family, Campylobacterales order. It was first isolated from cheetahs with gastritis, so has been associated with this disease in this particular species and others of its kind. It is Gram-negative, spiral-shaped, and grows under microaerophilic conditions. The type strain is 90-119.

<span class="mw-page-title-main">Julian Parkhill</span> Geneticist, working with pathogens

Julian Parkhill is Professor of Bacterial Evolution in the Department of Veterinary Medicine at the University of Cambridge. He previously served as head of pathogen genomics at the Wellcome Sanger Institute.

Duncan John Maskell, is a British and Australian biochemist, academic, and academic administrator, who specialises in molecular microbiology and bacterial infectious diseases. Since 2018, he has been Vice-Chancellor of the University of Melbourne, Australia. He previously taught at the University of Cambridge, England.

<span class="mw-page-title-main">Virginia L. Miller</span> American microbiologist

Virginia L. Miller is a microbiologist known for her work on studying the factors leading to disease caused by bacteria. Miller is an elected fellow of the American Academy of Microbiology (2003) and a former Pew Charitable Trust Biomedical Scholar (1989).

References

  1. 1 2 3 "Professor Mark Achtman FRS". London: The Royal Society. Archived from the original on 2 May 2015.
  2. 1 2 3 Mark Achtman publications indexed by Google Scholar
  3. Mark Achtman's publications indexed by the Scopus bibliographic database. (subscription required)
  4. Kay, G. L.; Sergeant, M. J.; Zhou, Z; Chan, J. Z.; Millard, A; Quick, J; Szikossy, I; Pap, I; Spigelman, M; Loman, N. J.; Achtman, M; Donoghue, H. D.; Pallen, M. J. (2015). "Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe". Nature Communications. 6: 6717. Bibcode:2015NatCo...6.6717K. doi:10.1038/ncomms7717. PMC   4396363 . PMID   25848958.
  5. Achtman, M; Zhou, Z (2014). "Distinct genealogies for plasmids and chromosome". PLOS Genetics . 10 (12): e1004874. doi: 10.1371/journal.pgen.1004874 . PMC   4270482 . PMID   25521852. Open Access logo PLoS transparent.svg
  6. Achtman, Mark (1965). Adenovirus 7: a study of the haemagglutinin and the haemagglutinating system (PhD thesis). University of Manitoba. OCLC   184853811.
  7. Achtman, Mark (1969). A Genetic Study of the F-Factor (PhD thesis). University of California, Berkeley. OCLC   29422094. ProQuest   302395896.
  8. 1 2 Achtman, M; Willetts, N; Clark, A. J. (1971). "Beginning a genetic analysis of conjugational transfer determined by the F factor in Escherichia coli by isolation and characterization of transfer-deficient mutants". Journal of Bacteriology. 106 (2): 529–38. doi:10.1128/JB.106.2.529-538.1971. PMC   285127 . PMID   4929865.
  9. Didelot, X; Pang, B; Zhou, Z; McCann, A; Ni, P; Li, D; Achtman, M; Kan, B (2015). "The role of china in the global spread of the current cholera pandemic". PLOS Genetics . 11 (3): e1005072. doi: 10.1371/journal.pgen.1005072 . PMC   4358972 . PMID   25768799. Open Access logo PLoS transparent.svg
  10. Zhou, Z; McCann, A; Weill, F. X.; Blin, C; Nair, S; Wain, J; Dougan, G; Achtman, M (2014). "Transient Darwinian selection in Salmonella enterica serovar Paratyphi a during 450 years of global spread of enteric fever". Proceedings of the National Academy of Sciences of the United States of America . 111 (33): 12199–204. Bibcode:2014PNAS..11112199Z. doi: 10.1073/pnas.1411012111 . PMC   4143038 . PMID   25092320. Open Access logo PLoS transparent.svg
  11. Achtman, M.; Wain, J.; Weill, F. O. X.; Nair, S.; Zhou, Z.; Sangal, V.; Krauland, M. G.; Hale, J. L.; Harbottle, H.; Uesbeck, A.; Dougan, G.; Harrison, L. H.; Brisse, S.; S. Enterica MLST Study Group (2012). Bessen, Debra E (ed.). "Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica". PLOS Pathogens . 8 (6): e1002776. doi: 10.1371/journal.ppat.1002776 . PMC   3380943 . PMID   22737074. Open Access logo PLoS transparent.svg
  12. Reuter, S; Connor, T. R.; Barquist, L; Walker, D; Feltwell, T; Harris, S. R.; Fookes, M; Hall, M. E.; Petty, N. K.; Fuchs, T. M.; Corander, J; Dufour, M; Ringwood, T; Savin, C; Bouchier, C; Martin, L; Miettinen, M; Shubin, M; Riehm, J. M.; Laukkanen-Ninios, R; Sihvonen, L. M.; Siitonen, A; Skurnik, M; Falcão, J. P.; Fukushima, H; Scholz, H. C.; Prentice, M. B.; Wren, B. W.; Parkhill, J; et al. (2014). "Parallel independent evolution of pathogenicity within the genus Yersinia". Proceedings of the National Academy of Sciences. 111 (18): 6768–73. Bibcode:2014PNAS..111.6768R. doi: 10.1073/pnas.1317161111 . PMC   4020045 . PMID   24753568.
  13. Mark Achtman on the Plague on YouTube
  14. Parkhill, J.; Achtman, M.; James, K. D.; Bentley, S. D.; Churcher, C.; Klee, S. R.; Morelli, G.; Basham, D.; Brown, D.; Chillingworth, T.; Davies, R. M.; Davis, P.; Devlin, K.; Feltwell, T.; Hamlin, N.; Holroyd, S.; Jagels, K.; Leather, S.; Moule, S.; Mungall, K.; Quail, M. A.; Rajandream, M. -A.; Rutherford, K. M.; Simmonds, M.; Skelton, J.; Whitehead, S.; Spratt, B. G.; Barrell, B. G. (2000). "Complete DNA sequence of a serogroup a strain of Neisseria meningitidis Z2491". Nature . 404 (6777): 502–6. Bibcode:2000Natur.404..502P. doi:10.1038/35006655. PMID   10761919. S2CID   4430718.
  15. Falush, D; Wirth, T; Linz, B; Pritchard, J. K.; Stephens, M; Kidd, M; Blaser, M. J.; Graham, D. Y.; Vacher, S; Perez-Perez, G. I.; Yamaoka, Y; Mégraud, F; Otto, K; Reichard, U; Katzowitsch, E; Wang, X; Achtman, M; Suerbaum, S (2003). "Traces of human migrations in Helicobacter pylori populations". Science. 299 (5612): 1582–5. Bibcode:2003Sci...299.1582F. doi:10.1126/science.1080857. PMID   12624269. S2CID   1515436.
  16. Parkhill, J.; Sebaihia, M.; Preston, A.; Murphy, L. D.; Thomson, N.; Harris, D. E.; Holden, M. T. G.; Churcher, C. M.; Bentley, S. D.; Mungall, K. L.; Cerdeño-Tárraga, A. M.; Temple, L.; James, K.; Harris, B.; Quail, M. A.; Achtman, M.; Atkin, R.; Baker, S.; Basham, D.; Bason, N.; Cherevach, I.; Chillingworth, T.; Collins, M.; Cronin, A.; Davis, P.; Doggett, J.; Feltwell, T.; Goble, A.; Hamlin, N.; et al. (2003). "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica". Nature Genetics . 35 (1): 32–40. doi: 10.1038/ng1227 . PMID   12910271.
  17. Maiden, M. C.; Bygraves, J. A.; Feil, E; Morelli, G; Russell, J. E.; Urwin, R; Zhang, Q; Zhou, J; Zurth, K; Caugant, D. A.; Feavers, I. M.; Achtman, M; Spratt, B. G. (1998). "Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms". Proceedings of the National Academy of Sciences of the United States of America. 95 (6): 3140–5. Bibcode:1998PNAS...95.3140M. doi: 10.1073/pnas.95.6.3140 . PMC   19708 . PMID   9501229.
  18. "UK Government Research Grants awarded to Mark Achtman". Research Councils UK. Archived from the original on 13 May 2015.

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