X-ray diffraction computed tomography

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X-ray diffraction computed tomography is an experimental technique that combines X-ray diffraction with the computed tomography data acquisition approach. X-ray diffraction (XRD) computed tomography (CT) was first introduced in 1987 by Harding et al. [1] using a laboratory diffractometer and a monochromatic X-ray pencil beam. The first implementation of the technique at synchrotron facilities was performed in 1998 by Kleuker et al. [2]

Contents

X-ray diffraction computed tomography can be divided into two main categories depending on how the XRD data are being treated, specifically the XRD data can be treated either as powder diffraction or single crystal diffraction data and this depends on the sample properties. If the sample contains small and randomly oriented crystals, then it generates smooth powder diffraction "rings" when using a 2D area detector. If the sample contains large crystals, then it generates "spotty" 2D diffraction patterns. The latter can be performed using also a letterbox, cone and parallel X-ray beam and yields 2D or 3D images corresponding to maps of the crystallites or "grains" present in the sample and their properties, such as stress or strain. [3] There exist several variations of this approach including 3DXRD, [4] X-ray diffraction contrast tomography (DCT) [5] and high energy X-ray diffraction microscopy (HEDM) [6]

X-ray diffraction computed tomography, often abbreviated as XRD-CT, typically refers to the technique invented by Harding et al. [1] which assumes that the acquired data are powder diffraction data. For this reason, it has also been mentioned as powder diffraction computed tomography [7] and diffraction scattering computed tomography (DSCT), [8] however they both refer to the same method.

Data acquisition

XRD-CT employs a monochromatic pencil beam scanning approach and captures the diffraction signal in transmission geometry, producing a diffraction projection dataset. In this setup, the sample moves along an axis perpendicular to the beam's direction. It is illuminated with a monochromatic finely collimated or focused "pencil" X-ray beam. A 2D area detector then records the scattered X-rays, optimizing for best counting statistics and speed. Typically, the translational scan's size surpasses the sample's diameter, ensuring its full coverage at all assessed angles. The size of the translation step is commonly aligned with the X-ray beam's horizontal size. In a perfect scenario for any pencil-beam scanning tomographic method, the measured angles should match the number of translation steps multiplied by π/2, adhering to the Nyquist sampling theorem. However, this number can often be reduced in practice be equal to the number of translation steps without substantially compromising the quality of reconstructed images. The usual angular range spans from 0 to π.

Data reconstruction

In most studies, the predominant data reconstruction approach is the 'reverse analysis' introduced by Bleuet et al. [9] where each sinogram is treated independently yielding a new CT image. Most often the filtered back projection reconstruction algorithm [10] is employed to reconstruct the XRD-CT images. The outcome is an image in which every pixel, or more accurately voxel, equates to a local diffraction pattern. The reconstructed data can also be seen as a stack of 2D square images, where each image corresponds to an X-ray scattering angle.

Reconstruction artefacts

XRD-CT makes the following assumptions:

In practise, one or more of these assumptions are not valid and the data suffer from artefacts. There are strategies to remove or significantly all of these artefacts:

Data analysis

Analyzing the local diffraction patterns can range from basic single-peak sequential batch fitting to a comprehensive one-step full-profile analysis, known as 'Rietveld-CT' (Wragg et al., 2015 [15] ). The latter method stands out for its efficiency over the typical sequential method since it shares global parameters across all local models. Examples of these parameters include zero error and instrumental broadening, which enhance the refinement process's stability. To elaborate, each voxel in the restructured images is made up of a local model (like multi-phase scale factors, lattice parameters, and crystallite sizes) tailored to match the corresponding local diffraction pattern. This implies that only the overarching parameters are consistent across local models. However, the application of Rietveld-CT has been limited to small images, specifically those of 60 × 60 voxels, with the feasibility for larger images hinging on the computer memory available. Most often though full profile analysis of the local diffraction patterns is performed on a pixel-by-pixel or line-by-line basis using conventional XRD data analysis methods, such LeBail, Pawley and Rietveld. All these methods employ fitting based on the restructured diffraction patterns. Another approach which is also computational expensive is the DLSR which performs the tomographic data reconstruction and peak fitting in a single step. [11] Regardless of the chosen analytical method, the final output comprises images filled with localized physico-chemical information. Each physico-chemical image corresponds to the refined parameters present in the local models, which might include maps that correspond to scale factors, lattice parameters, and crystallite sizes.

See also

Related Research Articles

<span class="mw-page-title-main">Crystallography</span> Scientific study of crystal structures

Crystallography is the experimental science of determining the arrangement of atoms in crystalline solids. Crystallography is a fundamental subject in the fields of materials science and solid-state physics. The word crystallography is derived from the Ancient Greek word κρύσταλλος, with its meaning extending to all solids with some degree of transparency, and γράφειν. In July 2012, the United Nations recognised the importance of the science of crystallography by proclaiming that 2014 would be the International Year of Crystallography.

<span class="mw-page-title-main">X-ray crystallography</span> Technique used for determining crystal structures and identifying mineral compounds

X-ray crystallography is the experimental science determining the atomic and molecular structure of a crystal, in which the crystalline structure causes a beam of incident X-rays to diffract into many specific directions. By measuring the angles and intensities of these diffracted beams, a crystallographer can produce a three-dimensional picture of the density of electrons within the crystal. From this electron density, the mean positions of the atoms in the crystal can be determined, as well as their chemical bonds, their crystallographic disorder, and various other information.

<span class="mw-page-title-main">CT scan</span> Medical imaging procedure using X-rays to produce cross-sectional images

A computed tomography scan is a medical imaging technique used to obtain detailed internal images of the body. The personnel that perform CT scans are called radiographers or radiology technologists.

<span class="mw-page-title-main">Tomography</span> Imaging by sections or sectioning using a penetrative wave

Tomography is imaging by sections or sectioning that uses any kind of penetrating wave. The method is used in radiology, archaeology, biology, atmospheric science, geophysics, oceanography, plasma physics, materials science, cosmochemistry, astrophysics, quantum information, and other areas of science. The word tomography is derived from Ancient Greek τόμος tomos, "slice, section" and γράφω graphō, "to write" or, in this context as well, "to describe." A device used in tomography is called a tomograph, while the image produced is a tomogram.

<span class="mw-page-title-main">Tomographic reconstruction</span> Estimate object properties from a finite number of projections

Tomographic reconstruction is a type of multidimensional inverse problem where the challenge is to yield an estimate of a specific system from a finite number of projections. The mathematical basis for tomographic imaging was laid down by Johann Radon. A notable example of applications is the reconstruction of computed tomography (CT) where cross-sectional images of patients are obtained in non-invasive manner. Recent developments have seen the Radon transform and its inverse used for tasks related to realistic object insertion required for testing and evaluating computed tomography use in airport security.

Electron crystallography is a method to determine the arrangement of atoms in solids using a transmission electron microscope (TEM). It can involve the use of high-resolution transmission electron microscopy images, electron diffraction patterns including convergent-beam electron diffraction or combinations of these. It has been successful in determining some bulk structures, and also surface structures. Two related methods are low-energy electron diffraction which has solved the structure of many surfaces, and reflection high-energy electron diffraction which is used to monitor surfaces often during growth.

A diffractometer is a measuring instrument for analyzing the structure of a material from the scattering pattern produced when a beam of radiation or particles interacts with it.

<span class="mw-page-title-main">X-ray microtomography</span> X-ray 3D imaging method

In radiography, X-ray microtomography uses X-rays to create cross-sections of a physical object that can be used to recreate a virtual model without destroying the original object. It is similar to tomography and X-ray computed tomography. The prefix micro- is used to indicate that the pixel sizes of the cross-sections are in the micrometre range. These pixel sizes have also resulted in creation of its synonyms high-resolution X-ray tomography, micro-computed tomography, and similar terms. Sometimes the terms high-resolution computed tomography (HRCT) and micro-CT are differentiated, but in other cases the term high-resolution micro-CT is used. Virtually all tomography today is computed tomography.

<span class="mw-page-title-main">Powder diffraction</span>

Powder diffraction is a scientific technique using X-ray, neutron, or electron diffraction on powder or microcrystalline samples for structural characterization of materials. An instrument dedicated to performing such powder measurements is called a powder diffractometer.

<span class="mw-page-title-main">Selected area diffraction</span>

Selected area (electron) diffraction is a crystallographic experimental technique typically performed using a transmission electron microscope (TEM). It is a specific case of electron diffraction used primarily in material science and solid state physics as one of the most common experimental techniques. Especially with appropriate analytical software, SAD patterns (SADP) can be used to determine crystal orientation, measure lattice constants or examine its defects.

Hugo M. Rietveld was a Dutch crystallographer who is famous for his publication on the full profile refinement method in powder diffraction, which became later known as the Rietveld refinement method. The method is used for the characterisation of crystalline materials from X-ray powder diffraction data. The Rietveld refinement uses a least squares approach to refine a theoretical line profile until it matches the measured profile. The introduction of this technique which used the full profile instead of individual reflections was a significant step forward in the diffraction analysis of powder samples.

Diffraction topography is a imaging technique based on Bragg diffraction. Diffraction topographic images ("topographies") record the intensity profile of a beam of X-rays diffracted by a crystal. A topography thus represents a two-dimensional spatial intensity mapping of reflected X-rays, i.e. the spatial fine structure of a Laue reflection. This intensity mapping reflects the distribution of scattering power inside the crystal; topographs therefore reveal the irregularities in a non-ideal crystal lattice. X-ray diffraction topography is one variant of X-ray imaging, making use of diffraction contrast rather than absorption contrast which is usually used in radiography and computed tomography (CT). Topography is exploited to a lesser extends with neutrons, and has similarities to dark field imaging in the electron microscope community.

<span class="mw-page-title-main">Coherent diffraction imaging</span>

Coherent diffractive imaging (CDI) is a "lensless" technique for 2D or 3D reconstruction of the image of nanoscale structures such as nanotubes, nanocrystals, porous nanocrystalline layers, defects, potentially proteins, and more. In CDI, a highly coherent beam of X-rays, electrons or other wavelike particle or photon is incident on an object.

<span class="mw-page-title-main">Industrial computed tomography</span> Computer-aided tomographic process

Industrial computed tomography (CT) scanning is any computer-aided tomographic process, usually X-ray computed tomography, that uses irradiation to produce three-dimensional internal and external representations of a scanned object. Industrial CT scanning has been used in many areas of industry for internal inspection of components. Some of the key uses for industrial CT scanning have been flaw detection, failure analysis, metrology, assembly analysis and reverse engineering applications. Just as in medical imaging, industrial imaging includes both nontomographic radiography and computed tomographic radiography.

<span class="mw-page-title-main">Cone beam computed tomography</span> Medical imaging technique

Cone beam computed tomography is a medical imaging technique consisting of X-ray computed tomography where the X-rays are divergent, forming a cone.

<span class="mw-page-title-main">Phase-contrast X-ray imaging</span> Imaging systems using changes in phase

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Three-dimensional X-ray diffraction (3DXRD) is a microscopy technique using hard X-rays to investigate the internal structure of polycrystalline materials in three dimensions. For a given sample, 3DXRD returns the shape, juxtaposition, and orientation of the crystallites ("grains") it is made of. 3DXRD allows investigating micrometer- to millimetre-sized samples with resolution ranging from hundreds of nanometers to micrometers. Other techniques employing X-rays to investigate the internal structure of polycrystalline materials include X-ray diffraction contrast tomography (DCT) and high energy X-ray diffraction (HEDM).

<span class="mw-page-title-main">Operation of computed tomography</span>

X-ray computed tomography operates by using an X-ray generator that rotates around the object; X-ray detectors are positioned on the opposite side of the circle from the X-ray source.

<span class="mw-page-title-main">Cryogenic electron microscopy</span> Form of transmission electron microscopy (TEM)

Cryogenic electron microscopy (cryo-EM) is a cryomicroscopy technique applied on samples cooled to cryogenic temperatures. For biological specimens, the structure is preserved by embedding in an environment of vitreous ice. An aqueous sample solution is applied to a grid-mesh and plunge-frozen in liquid ethane or a mixture of liquid ethane and propane. While development of the technique began in the 1970s, recent advances in detector technology and software algorithms have allowed for the determination of biomolecular structures at near-atomic resolution. This has attracted wide attention to the approach as an alternative to X-ray crystallography or NMR spectroscopy for macromolecular structure determination without the need for crystallization.

Dark-field X-ray microscopy is an imaging technique used for multiscale structural characterisation. It is capable of mapping deeply embedded structural elements with nm-resolution using synchrotron X-ray diffraction-based imaging. The technique works by using scattered X-rays to create a high degree of contrast, and by measuring the intensity and spatial distribution of the diffracted beams, it is possible to obtain a three-dimensional map of the sample's structure, orientation, and local strain.

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