ChimerDB

ChimerDB

Content
Description	fusion sequences.
Contact
Research center	Ewha Womans University, Seoul 120-750, Korea.
Laboratory	Division of Molecular Life Sciences
Authors	Namshin Kim
Primary citation	Kim & al. (2006) [1]
Access
Website	http://genome.ewha.ac.kr/ChimerDB/

ChimerDB in computational biology is a database of fusion sequences. ^[1]

ChimerDB currently consists of three searchable datasets. ^[2]

• ChimerKB is a curated knowledge base of 1,066 fusion genes sourced from publicly available scientific literature.
• ChimerPub provides continuously updated descriptions on fusion genes text mined from publications.
• ChimerSeq is a database of RNA-seq data of fusion sequences downloaded from the TCGA data portal.

See also

• ECgene
• Fusion gene

References

1. Kim, Namshin; Kim Pora; Nam Seungyoon; Shin Seokmin; Lee Sanghyuk (Jan 2006). "ChimerDB--a knowledgebase for fusion sequences". Nucleic Acids Res. 34 (Database issue): D21–4. doi:10.1093/nar/gkj019. PMC   1347382 . PMID   16381848.
2. Lee, Myunggyo; Lee, Kyubum; Yu, Namhee; Jang, Insu; Choi, Ikjung; Kim, Pora; Jang, Ye Eun; Kim, Byounggun; Kim, Sunkyu (2017-01-04). "ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining". Nucleic Acids Research. 45 (Database issue): D784 –D789. doi:10.1093/nar/gkw1083. ISSN   0305-1048. PMC   5210563 . PMID   27899563.

External links

• http://203.255.191.229:8080/chimerdbv31/mindex.cdb Archived 2017-11-07 at the Wayback Machine