Chrysochromulina ericina virus

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Chrysochromulina ericina virus 01B
Transmission electron micrographs of H. ericinainfected by CeV-O1B.png
Thin sections of a cell from Haptolina ericina infected with CeV-01B [1]
Virus classification OOjs UI icon edit-ltr.svg
(unranked): Virus
Realm: Varidnaviria
Kingdom: Bamfordvirae
Phylum: Nucleocytoviricota
Class: Megaviricetes
Order: Imitervirales
Family: Mimiviridae (?)
Virus:
Chrysochromulina ericina virus 01B

Chrysochromulina ericina virus 01B, or simply Chrysochromulina ericina virus (CeV) is a giant virus in the family Mimiviridae infecting Haptolina ericina (previously assigned to the genus Chrysochromulina [2] ), a marine microalgae member of the Haptophyta. CeV is a dsDNA virus. [1]

Contents

History and taxonomy

CeV was discovered in the Norwegian coastal waters in 1998. It was then isolated and characterized. [1] It was then believed to belong to the phycodnaviridae along with all other known algae infecting viruses. [1] [3] The discovery of Acanthamoeba polyphaga mimivirus helped to discover that there existed marine mimiviruses that could infect microalgae. [4] A CeV strain was later found in the Gulf of Main in 2013 [5] and the phylogenetic analysis of some specific marker confirmed its proximity with mimiviruses. [3] [5] In 2015,CeV was fully sequenced to classify it as a mimiviridae [6]

It was more recently proposed a group of mimiviridae infecting microalgae that would include CeV together with Phaeocystis globosa virus (PgV) infecting a haptophyceae and Aureococcus anophagefferens virus (AaV) infecting a stramenopile. [7]

Structure

CeV has a diameter of 160 nm. It has an icosahedral structure and no external membrane. [1]

Genome

Diagram showing the proximity of gene content of five members of the family Mimiviridae Diagram showing the proximity in gene content of five members of the family Mimiviridae.jpg
Diagram showing the proximity of gene content of five members of the family Mimiviridae

CeV’s genome has 473,558 bp and a low G-C content of 25%. It is predicted to have 512 ORFs. [6] CeV possess a large number of core genes like the major capsid protein and the DNA polymerase B close to the respective genes of PgV. CeV may have the ability to repair its DNA as it is suggested by the presence of the sequences of MutS7 and an ERCC4-type DNA repair nuclease (which are involved in DNA repair). This last enzyme is typically used for repairing DNA damage caused by UV light which is consistent with the habitat of a mimiviridae infecting a photosynthetic host. [7] It has also 305 unique genes that found no match in the public databases [7]

Viral cycle

Little is known about CeV’s cycle. It replicates in the host’s cytoplasm and its lytic cycle lasts 14 to 19 hours. [1] CeV possess in its genome a sequence coding for a DNA polymerase and two RNA-polymerase II DNA-dependent. It also has twelve tRNA indicating an important machinery allowing for a relative independent replication and virion formation that is characteristic for mimiviridae. [7]

Related Research Articles

<i>Mimivirus</i> Genus of viruses

Mimivirus is a genus of giant viruses, in the family Mimiviridae. Amoeba serve as their natural hosts. This genus contains a single identified species named Acanthamoeba polyphaga mimivirus (APMV). It also refers to a group of phylogenetically related large viruses.

Pseudoviridae is a family of viruses, which includes three genera.

Viral eukaryogenesis is the hypothesis that the cell nucleus of eukaryotic life forms evolved from a large DNA virus in a form of endosymbiosis within a methanogenic archaeon or a bacterium. The virus later evolved into the eukaryotic nucleus by acquiring genes from the host genome and eventually usurping its role. The hypothesis was first proposed by Philip Bell in 2001 and was further popularized with the discovery of large, complex DNA viruses that are capable of protein biosynthesis.

<i>Coccolithovirus</i> Genus of viruses

Coccolithovirus is a genus of giant double-stranded DNA virus, in the family Phycodnaviridae. Algae, specifically Emiliania huxleyi, a species of coccolithophore, serve as natural hosts. There is only one described species in this genus: Emiliania huxleyi virus 86.

Phycodnaviridae is a family of large (100–560 kb) double-stranded DNA viruses that infect marine or freshwater eukaryotic algae. Viruses within this family have a similar morphology, with an icosahedral capsid. As of 2014, there were 33 species in this family, divided among 6 genera. This family belongs to a super-group of large viruses known as nucleocytoplasmic large DNA viruses. Evidence was published in 2014 suggesting that specific strains of Phycodnaviridae might infect humans rather than just algal species, as was previously believed. Most genera under this family enter the host cell by cell receptor endocytosis and replicate in the nucleus. Phycodnaviridae play important ecological roles by regulating the growth and productivity of their algal hosts. Algal species such Heterosigma akashiwo and the genus Chrysochromulina can form dense blooms which can be damaging to fisheries, resulting in losses in the aquaculture industry. Heterosigma akashiwo virus (HaV) has been suggested for use as a microbial agent to prevent the recurrence of toxic red tides produced by this algal species. Phycodnaviridae cause death and lysis of freshwater and marine algal species, liberating organic carbon, nitrogen and phosphorus into the water, providing nutrients for the microbial loop.

<span class="mw-page-title-main">Sputnik virophage</span> Subviral agent

Mimivirus-dependent virus Sputnik is a subviral agent that reproduces in amoeba cells that are already infected by a certain helper virus; Sputnik uses the helper virus's machinery for reproduction and inhibits replication of the helper virus. It is known as a virophage, in analogy to the term bacteriophage.

<i>Mimiviridae</i> Family of viruses

Mimiviridae is a family of viruses. Amoeba and other protists serve as natural hosts. The family is divided in up to 4 subfamilies. Viruses in this family belong to the nucleocytoplasmic large DNA virus clade (NCLDV), also referred to as giant viruses.

<i>Chrysochromulina</i> Genus of single-celled organisms

Chrysochromulina is a genus of haptophytes. This phytoplankton is distributed globally in brackish and marine waters across approximately 60 known species. All Chrysochromulina species are phototrophic, however some have been shown to be mixotrophic, including exhibiting phagotrophy under certain environmental conditions. The cells are small, characterized by having scales, and typically observed using electron microscopy. Some species, under certain environmental conditions have been shown to produce toxic compounds that are harmful to larger marine life including fish.

Mamavirus is a large and complex virus in the Group I family Mimiviridae. The virus is exceptionally large, and larger than many bacteria. Mamavirus and other mimiviridae belong to nucleocytoplasmic large DNA virus (NCLDVs) family. Mamavirus can be compared to the similar complex virus mimivirus; mamavirus was so named because it is similar to but larger than mimivirus.

<i>Cafeteria roenbergensis virus</i> Species of virus

Cafeteria roenbergensis virus (CroV) is a giant virus that infects the marine bicosoecid flagellate Cafeteria roenbergensis, a member of the microzooplankton community.

A giant virus, sometimes referred to as a girus, is a very large virus, some of which are larger than typical bacteria. All known giant viruses belong to the phylum Nucleocytoviricota.

<span class="mw-page-title-main">Megavirus</span> Genus of viruses

Megavirus is a viral genus containing a single identified species named Megavirus chilense, phylogenetically related to Acanthamoeba polyphaga Mimivirus (APMV). In colloquial speech, Megavirus chilensis is more commonly referred to as just “Megavirus”. Until the discovery of pandoraviruses in 2013, it had the largest capsid diameter of all known viruses, as well as the largest and most complex genome among all known viruses.

<i>Pandoravirus</i> Genus of giant virus possessing a large double-stranded DNA genome

Pandoravirus is a genus of giant virus, first discovered in 2013. It is the third largest in physical size of any known viral genus, behind Pithovirus and Megaklothovirus. Pandoraviruses have double stranded DNA genomes, with the largest genome size of any known viral genus.

Prymnesiovirus is a genus of viruses, in the family Phycodnaviridae. Alga serve as natural hosts. There is only one species in this genus: Chrysochromulina brevifilum virus PW1 (CbV-PW1). It infects Haptolina brevifila, basionym: Chrysochromulina brevifilum.

<span class="mw-page-title-main">Zamilon virophage</span> Virus type

Mimivirus-dependent virus Zamilon, or Zamilon, is a virophage, a group of small DNA viruses that infect protists and require a helper virus to replicate; they are a type of satellite virus. Discovered in 2013 in Tunisia, infecting Acanthamoeba polyphaga amoebae, Zamilon most closely resembles Sputnik, the first virophage to be discovered. The name is Arabic for "the neighbour". Its spherical particle is 50–60 nm in diameter, and contains a circular double-stranded DNA genome of around 17 kb, which is predicted to encode 20 polypeptides. A related strain, Zamilon 2, has been identified in North America.

Jingmenvirus is a group of positive-sense single-stranded RNA viruses with segmented genomes. They are primarily associated with arthropods and are one of only two known segmented RNA viruses that infect animal hosts. The first group member, the Jingmen tick virus (JMTV), was described in 2014. Another member, the Guaico Culex virus (GCXV), has a highly unusual multicomponent architecture in which the genome segments are separately enclosed in different viral capsids.

<i>Tupanvirus</i> Proposed genus of viruses

Tupanvirus is a genus of viruses first described in 2018. The genus is composed of two species of virus that are in the giant virus group. Researchers discovered the first isolate in 2012 from deep water sediment samples taken at 3000m depth off the coast of Brazil. The second isolate was collected from a soda lake in Southern Nhecolândia, Brazil in 2014. They are named after Tupã (Tupan), a Guaraní thunder god, and the places they were found. These are the first viruses reported to possess genes for amino-acyl tRNA synthetases for all 20 standard amino acids.

<i>Ortervirales</i> Order of viruses

Ortervirales is an order that contains all accepted species of single-stranded RNA viruses that replicate through a DNA intermediate and all accepted species of double-stranded DNA viruses that replicate through an RNA intermediate . The name is derived from the reverse of retro.

Nucleocytoviricota is a phylum of viruses. Members of the phylum are also known as the nucleocytoplasmic large DNA viruses (NCLDV), which serves as the basis of the name of the phylum with the suffix -viricota for virus phylum. These viruses are referred to as nucleocytoplasmic because they are often able to replicate in both the host's cell nucleus and cytoplasm.

Algal viruses are the viruses infecting algae, which are photosynthetic single-celled eukaryotes. As of 2020, there were 61 viruses known to infect algae. Algae are integral components of aquatic food webs and drive nutrient cycling, so the viruses infecting algal populations also impacts the organisms and nutrient cycling systems that depend on them. Thus, these viruses can have significant, worldwide economic and ecological effects. Their genomes varied between 4.4 to 560 kilobase pairs (kbp) long and used double-stranded Deoxyribonucleic Acid (dsDNA), double-stranded Ribonucleic Acid (dsRNA), single-stranded Deoxyribonucleic Acid (ssDNA), and single-stranded Ribonucleic Acid (ssRNA). The viruses ranged between 20 and 210 nm in diameter. Since the discovery of the first algae-infecting virus in 1979, several different techniques have been used to find new viruses infecting algae and it seems that there are many algae-infecting viruses left to be discovered

References

  1. 1 2 3 4 5 6 Sandaa, Ruth-Anne; Heldal, Mikal; Castberg, Tonje; Thyrhaug, Runar; Bratbak, Gunnar (November 2001). "Isolation and Characterization of Two Viruses with Large Genome Size Infecting Chrysochromulina ericina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae)". Virology. 290 (2): 272–280. doi: 10.1006/viro.2001.1161 . PMID   11883191.
  2. Edvardsen, Bente; Eikrem, Wenche; Throndsen, Jahn; Sáez, Alberto G.; Probert, Ian; Medlin, Linda K. (August 2011). "Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta)". European Journal of Phycology. 46 (3): 202–228. Bibcode:2011EJPhy..46..202E. doi: 10.1080/09670262.2011.594095 .
  3. 1 2 Larsen, J. B.; Larsen, A.; Bratbak, G.; Sandaa, R.-A. (21 March 2008). "Phylogenetic Analysis of Members of the Phycodnaviridae Virus Family, Using Amplified Fragments of the Major Capsid Protein Gene". Applied and Environmental Microbiology. 74 (10): 3048–3057. Bibcode:2008ApEnM..74.3048L. doi:10.1128/AEM.02548-07. PMC   2394928 . PMID   18359826.
  4. Monier, Adam; Larsen, Jens B.; Sandaa, Ruth-Anne; Bratbak, Gunnar; Claverie, Jean-Michel; Ogata, Hiroyuki (2008). "Marine mimivirus relatives are probably large algal viruses". Virology Journal. 5 (1): 12. doi: 10.1186/1743-422X-5-12 . PMC   2245910 . PMID   18215256.
  5. 1 2 Wilson, William H.; Gilg, Ilana C.; Duarte, Amy; Ogata, Hiroyuki (October 2014). "Development of DNA mismatch repair gene, MutS, as a diagnostic marker for detection and phylogenetic analysis of algal Megaviruses". Virology. 466–467: 123–128. doi: 10.1016/j.virol.2014.07.001 . PMID   25063474.
  6. 1 2 Gallot-Lavallée, Lucie; Pagarete, António; Legendre, Matthieu; Santini, Sebastien; Sandaa, Ruth-Anne; Himmelbauer, Heinz; Ogata, Hiroyuki; Bratbak, Gunnar; Claverie, Jean-Michel (3 December 2015). "The 474-Kilobase-Pair Complete Genome Sequence of CeV-01B, a Virus Infecting Haptolina (Chrysochromulina) ericina (Prymnesiophyceae)". Genome Announcements. 3 (6). doi:10.1128/genomeA.01413-15. PMC   4669402 . PMID   26634761.
  7. 1 2 3 4 5 Gallot-Lavallée, Lucie; Blanc, Guillaume; Claverie, Jean-Michel; McFadden, Grant (15 July 2017). "Comparative Genomics of Chrysochromulina ericina virus and Other Microalga-Infecting Large DNA Viruses Highlights Their Intricate Evolutionary Relationship with the Established Mimiviridae Family". Journal of Virology. 91 (14). doi:10.1128/JVI.00230-17. PMC   5487555 . PMID   28446675.