HBV RNA encapsidation signal epsilon

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HBV RNA encapsidation signal epsilon
HBV Epsilon.jpg
Predicted secondary structure and sequence conservation of HBV_epsilon
Identifiers
SymbolHBV_epsilon
Alt. SymbolsHBV
Rfam RF01047
Other data
RNA type Cis-reg
Domain(s) Viruses
GO GO:0019079
SO SO:0005836
PDB structures PDBe

The HBV RNA encapsidation signal epsilon (HBV_epsilon) is an element essential for HBV virus replication.

Contents

It is an RNA structure situated near the 5' end of the HBV pregenomic RNA. [1] The structure consists of a lower stem, a bulge region, an upper stem and a tri-loop. The structure was determined and refined through enzymatic probing and NMR spectroscopy. [2] The closure of the tri-loop was not predicted by RNA structure prediction programs but observed in the NMR structure. The regions shown to be critical for encapsidation of the RNA in the viral lifecycle are the bulge, upper stem and tri-loop which interact with the terminal protein domain of the HBV viral polymerase. [3] [4]

See also

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References

  1. Beck J, Nassal M (January 2007). "Hepatitis B virus replication". World J. Gastroenterol. 13 (1): 48–64. doi: 10.3748/wjg.v13.i1.48 . PMC   4065876 . PMID   17206754.
  2. Flodell S, Schleucher J, Cromsigt J, Ippel H, Kidd-Ljunggren K, Wijmenga S (November 2002). "The apical stem-loop of the hepatitis B virus encapsidation signal folds into a stable tri-loop with two underlying pyrimidine bulges". Nucleic Acids Res. 30 (21): 4803–4811. doi:10.1093/nar/gkf603. PMC   135823 . PMID   12409471.
  3. Kramvis A, Kew MC (November 1998). "Structure and function of the encapsidation signal of hepadnaviridae". J. Viral Hepat. 5 (6): 357–367. doi:10.1046/j.1365-2893.1998.00124.x. PMID   9857345. S2CID   6726175.
  4. Beck, J; Nassal, M (2003). "Efficient Hsp90-independent in vitro activation by Hsc70 and Hsp40 of duck hepatitis B virus reverse transcriptase, an assumed Hsp90 client protein". The Journal of Biological Chemistry. 278 (38): 36128–36138. doi: 10.1074/jbc.M301069200 . PMID   12851401.