Human Biomolecular Atlas Program

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3 branches of HuBMAP: transformative technology development, the tissue mapping center and the HuBMAP integration, visualization and engagement. HubMap - Figure 1.png
3 branches of HuBMAP: transformative technology development, the tissue mapping center and the HuBMAP integration, visualization and engagement.

The Human Biomolecular Atlas Program (HuBMAP) is a program funded by the US National Institutes of Health to characterize the human body at single cell resolution, integrated to other efforts such as the Human Cell Atlas. [1] Among the products of the program is the Azimuth reference datasets for single-cell RNA seq data [2] [3] and the ASCT+B Reporter, a visualization tool for anatomical structures, cell types and biomarkers. [4] [5]

Millitomes are used to create uniformly sized tissue blocks that match the shape and size of organs from HuBMAP's 3D Reference Object Library. [6]

The HuBMAP received 27 million US dollars of funding from the NIH in 2020 and about 28.5 million in 2021. [7]

Technologies and approaches used by the HuBMAP consortium, including single-cell RNA sequencing and spatial trancriptomics. HubMap - Figure 3.png
Technologies and approaches used by the HuBMAP consortium, including single-cell RNA sequencing and spatial trancriptomics.

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A millitome is a device designed to hold a freshly procured organ and facilitate cutting it into many small tissue blocks for usage in single-cell analysis. A millitome has discrete, equally placed cutting grooves in both the x and y directions to guide a carbon steel cutting knife to produce uniformly sized slices or cubes of tissue material. Millitome design and usage was developed by the HIVE MC-IU Team, Indiana University and members of the Cyberinfrastructure for Network Science Center (CNS) for the Human Reference Atlas project, which is part of the U.S. National Institutes of Health Common Fund’s Human Biomolecular Atlas Program (HuBMAP).

References

  1. 1 2 3 Snyder MP, Lin S, Posgai A, Atkinson M, Regev A, Rood J, et al. (HuBMAP Consortium) (October 2019). "The human body at cellular resolution: the NIH Human Biomolecular Atlas Program". Nature. 574 (7777): 187–192. Bibcode:2019Natur.574..187H. doi:10.1038/S41586-019-1629-X. PMC   6800388 . PMID   31597973.
  2. Hao Y, Hao S, Andersen-Nissen E, Mauck WM, Zheng S, Butler A, et al. (June 2021). "Integrated analysis of multimodal single-cell data". Cell. 184 (13): 3573–3587.e29. doi:10.1016/j.cell.2021.04.048. PMC   8238499 . PMID   34062119.
  3. "Azimuth". azimuth.hubmapconsortium.org. Archived from the original on 2022-07-06. Retrieved 2022-07-11.
  4. "ASCT+B Reporter". ccf-asctb-reporter-v2.netlify.app. Retrieved 2022-07-11.
  5. Boppana A, Lee S, Malhotra R, Halushka M, Quardokus EM, Herr BW, Börner K, Weber GM (2022-03-01). "Anatomical structures, cell types, and biomarkers of the healthy human blood vasculature". bioRxiv. doi:10.1101/2022.02.28.482302. S2CID   247231648.
  6. HIVE MC-IU Team. "HuBMAP: CCF Portal". hubmapconsortium.github.io. Retrieved 2022-08-27.
  7. "NIH Common Fund CONGRESSIONAL JUSTIFICATION FY 2022" (PDF). Archived (PDF) from the original on 2021-11-05. Retrieved 2022-07-11.