In graph theory, a tree decomposition is a mapping of a graph into a tree that can be used to define the treewidth of the graph and speed up solving certain computational problems on the graph.
A Bayesian network is a probabilistic graphical model that represents a set of variables and their conditional dependencies via a directed acyclic graph (DAG). While it is one of several forms of causal notation, causal networks are special cases of Bayesian networks. Bayesian networks are ideal for taking an event that occurred and predicting the likelihood that any one of several possible known causes was the contributing factor. For example, a Bayesian network could represent the probabilistic relationships between diseases and symptoms. Given symptoms, the network can be used to compute the probabilities of the presence of various diseases.
A graphical model or probabilistic graphical model (PGM) or structured probabilistic model is a probabilistic model for which a graph expresses the conditional dependence structure between random variables. They are commonly used in probability theory, statistics—particularly Bayesian statistics—and machine learning.
In the mathematical field of graph theory, a spanning treeT of an undirected graph G is a subgraph that is a tree which includes all of the vertices of G. In general, a graph may have several spanning trees, but a graph that is not connected will not contain a spanning tree. If all of the edges of G are also edges of a spanning tree T of G, then G is a tree and is identical to T.
In graph theory, a perfect graph is a graph in which the chromatic number equals the size of the maximum clique, both in the graph itself and in every induced subgraph. In all graphs, the chromatic number is greater than or equal to the size of the maximum clique, but they can be far apart. A graph is perfect when these numbers are equal, and remain equal after the deletion of arbitrary subsets of vertices.
In the mathematical area of graph theory, a chordal graph is one in which all cycles of four or more vertices have a chord, which is an edge that is not part of the cycle but connects two vertices of the cycle. Equivalently, every induced cycle in the graph should have exactly three vertices. The chordal graphs may also be characterized as the graphs that have perfect elimination orderings, as the graphs in which each minimal separator is a clique, and as the intersection graphs of subtrees of a tree. They are sometimes also called rigid circuit graphs or triangulated graphs: a chordal completion of a graph is typically called a triangulation of that graph.
Belief propagation, also known as sum–product message passing, is a message-passing algorithm for performing inference on graphical models, such as Bayesian networks and Markov random fields. It calculates the marginal distribution for each unobserved node, conditional on any observed nodes. Belief propagation is commonly used in artificial intelligence and information theory, and has demonstrated empirical success in numerous applications, including low-density parity-check codes, turbo codes, free energy approximation, and satisfiability.
In the domain of physics and probability, a Markov random field (MRF), Markov network or undirected graphical model is a set of random variables having a Markov property described by an undirected graph. In other words, a random field is said to be a Markov random field if it satisfies Markov properties. The concept originates from the Sherrington–Kirkpatrick model.
A factor graph is a bipartite graph representing the factorization of a function. In probability theory and its applications, factor graphs are used to represent factorization of a probability distribution function, enabling efficient computations, such as the computation of marginal distributions through the sum–product algorithm. One of the important success stories of factor graphs and the sum–product algorithm is the decoding of capacity-approaching error-correcting codes, such as LDPC and turbo codes.
In graph theory, the treewidth of an undirected graph is an integer number which specifies, informally, how far the graph is from being a tree. The smallest treewidth is 1; the graphs with treewidth 1 are exactly the trees and the forests. The graphs with treewidth at most 2 are the series–parallel graphs. The maximal graphs with treewidth exactly k are called k-trees, and the graphs with treewidth at most k are called partial k-trees. Many other well-studied graph families also have bounded treewidth.
Conditional random fields (CRFs) are a class of statistical modeling methods often applied in pattern recognition and machine learning and used for structured prediction. Whereas a classifier predicts a label for a single sample without considering "neighbouring" samples, a CRF can take context into account. To do so, the predictions are modelled as a graphical model, which represents the presence of dependencies between the predictions. What kind of graph is used depends on the application. For example, in natural language processing, "linear chain" CRFs are popular, for which each prediction is dependent only on its immediate neighbours. In image processing, the graph typically connects locations to nearby and/or similar locations to enforce that they receive similar predictions.
In constraint satisfaction, a decomposition method translates a constraint satisfaction problem into another constraint satisfaction problem that is binary and acyclic. Decomposition methods work by grouping variables into sets, and solving a subproblem for each set. These translations are done because solving binary acyclic problems is a tractable problem.
In graph theory, a moral graph is used to find the equivalent undirected form of a directed acyclic graph. It is a key step of the junction tree algorithm, used in belief propagation on graphical models.
In graph theory, an area of mathematics, an equitable coloring is an assignment of colors to the vertices of an undirected graph, in such a way that
Graphical models have become powerful frameworks for protein structure prediction, protein–protein interaction, and free energy calculations for protein structures. Using a graphical model to represent the protein structure allows the solution of many problems including secondary structure prediction, protein-protein interactions, protein-drug interaction, and free energy calculations.
In the study of graph algorithms, Courcelle's theorem is the statement that every graph property definable in the monadic second-order logic of graphs can be decided in linear time on graphs of bounded treewidth. The result was first proved by Bruno Courcelle in 1990 and independently rediscovered by Borie, Parker & Tovey (1992). It is considered the archetype of algorithmic meta-theorems.
In the mathematical fields of graph theory and finite model theory, the logic of graphs deals with formal specifications of graph properties using sentences of mathematical logic. There are several variations in the types of logical operation that can be used in these sentences. The first-order logic of graphs concerns sentences in which the variables and predicates concern individual vertices and edges of a graph, while monadic second-order graph logic allows quantification over sets of vertices or edges. Logics based on least fixed point operators allow more general predicates over tuples of vertices, but these predicates can only be constructed through fixed-point operators, restricting their power.
In graph theory, a branch of mathematics, a chordal completion of a given undirected graph G is a chordal graph, on the same vertex set, that has G as a subgraph. A minimal chordal completion is a chordal completion such that any graph formed by removing an edge would no longer be a chordal completion. A minimum chordal completion is a chordal completion with as few edges as possible.
