Michael T. McManus (biologist)

Last updated
Michael T. McManus (biologist)
NationalityAmerican
Alma materAuburn University (B.S.), University of Alabama at Birmingham (Ph.D.), Massachusetts Institute of Technology (postdoc)
Known forRNA interference, microRNA research, gene regulation
AwardsWM Keck Award, NIH Transformative Research Award, Robert J. Kleberg, Jr. and Helen C. Kleberg Award
Scientific career
FieldsSynthetic Biology, Immunology, RNA Biology
InstitutionsUniversity of California, San Francisco
Academic advisorsStephen L. Hajduk, Phillip A. Sharp

Michael T. McManus is an American professor of Microbiology and Immunology at the University of California, San Francisco (UCSF), where he holds the Vincent and Stella Coates Endowed Chair. He directs the Keck Center for Noncoding RNAs and the UCSF ViraCore facility. His research areas include RNA biology, gene regulation, immunology, and high-throughput screening. McManus serves as an Investigator at the Chan Zuckerberg Biohub. [1]

Contents

Early life and education

Michael T. McManus earned his Bachelor of Science (B.S.) in Horticultural Science from Auburn University in 1991. He completed his Ph.D. in Biochemistry and Molecular Genetics at the University of Alabama at Birmingham in 2000, under the mentorship of Dr. Stephen L. Hajduk. His doctoral research involved identifying mitochondrial RNA editing ligases from Trypanosoma brucei, providing support for an enzymatic model for insertional/deletional RNA editing. [2]

He then conducted postdoctoral research in mammalian RNA interference (RNAi) and microRNA at the Massachusetts Institute of Technology (MIT) under Nobel Laureate Phillip A. Sharp. [3] where he provided early evidence of small interfering RNA (siRNA)-mediated gene silencing in primary cells. [4] In 2002, McManus and colleagues reported on the development of short hairpin RNA techniques, contributing to the field of gene silencing and lentiviral delivery systems. [5] [6] [7] [8]

Career

McManus began started as an Assistant Professor at UCSF in the Department of Microbiology and Immunology and the UCSF Diabetes Center. He became a Full Professor in 2016, holding the Vincent and Stella Coates Endowed Chair [9]

He is the Director of the Keck Center for Noncoding RNAs and the Core Director of the UCSF ViraCore facility. Since 2022, Dr. McManus has served as an Investigator at the Chan Zuckerberg Biohub. [10] He is also a member of the UCSF Helen Diller Family Comprehensive Cancer Center and has held memberships at the Innovative Genomics Institute [11] and the Eli & Edythe Broad Center for Regeneration Medicine and Stem Cell Research. His work involves computational and synthetic biology approaches to study human disease, particularly through gene regulation and high-throughput screening techniques. [1]

Research contributions

McManus's research has encompassed the development of RNA interference technologies, including shRNA methodologies, and the application of deep sequencing in high-throughput gene perturbation screens. Notable contributions include:

Awards and honors

In 2006, McManus received the WM Keck Award for establishing a Center for Noncoding RNAs. [24] In 2014, he received the NIH Transformative Research Award for his project on tracing cell lineages, focusing on developing high-throughput lineage tracing technologies. [25] In 2019, he received the Robert J. Kleberg, Jr. and Helen C. Kleberg Award for his work on engineering cell-based mRNA delivery therapies. [26] Additional honors are detailed on his university's official website. [27]

References

  1. 1 2 Bashyam, Hema (2008). "Michael T. McManus: Interrupting biology". Journal of Experimental Medicine. 205 (3): 506–507. doi:10.1084/jem.2053pi. PMC   2275373 . PMID   18347104.
  2. McManus, MT; Shimamura, M; Grams, J; Hajduk, SL (2001). "Identification of candidate mitochondrial RNA editing ligases from Trypanosoma brucei". RNA. 7 (2): 167–175. doi:10.1017/s1355838201002072. PMC   1370075 . PMID   11233974.
  3. McManus, M.; Sharp, P. (2002). "Gene silencing in mammals by small interfering RNAs" . Nature Reviews Genetics. 3 (10): 737–747. doi:10.1038/nrg908. PMID   12360232 . Retrieved March 31, 2025.
  4. McManus, MT; Haines, BB; Dillon, CP; Whitehurst, CE; van Parijs, L; Chen, J; Sharp, PA (2002). "Small interfering RNA-mediated gene silencing in T lymphocytes". Journal of Immunology. 169 (10): 5754–5760. doi:10.4049/jimmunol.169.10.5754. PMID   12421955.
  5. 1 2 Paddison PJ, Caudy AA, Bernstein E, Hannon GJ, Conklin DS (April 2002). "Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells". Genes & Development. 16 (8): 948–58. doi:10.1101/gad.981002. PMC   152352 . PMID   11959843.
  6. 1 2 Brummelkamp TR, Bernards R, Agami R (April 2002). "A system for stable expression of short interfering RNAs in mammalian cells". Science. 296 (5567): 550–3. Bibcode:2002Sci...296..550B. doi:10.1126/science.1068999. hdl: 1874/15573 . PMID   11910072.
  7. 1 2 McManus MT, Petersen CP, Haines BB, Chen J, Sharp PA (June 2002). "Gene silencing using micro-RNA designed hairpins". RNA. 8 (6) S1355838202024032: 842–850. doi:10.1017/s1355838202024032. PMC   137036 . PMID   12088155.
  8. Rubinson, Douglas A.; Dillon, Christopher P.; Kwiatkowski, Adam V.; Sievers, Claudia; Yang, Lili; Kopinja, Johnny; Rooney, Dina L.; Zhang, Mingdi; Ihrig, Melanie M.; McManus, Michael T.; Gertler, Frank B.; Scott, Martin L.; Van Parijs, Luk (March 2003). "A lentivirus-based system to functionally silence genes in primary mammalian cells, stem cells and transgenic mice by RNA interference". Nature Genetics. 33 (3): 401–406. doi:10.1038/ng1117. PMID   12590264.
  9. "Michael T. McManus, PhD - UCSF Profiles". UCSF Profiles. Retrieved March 30, 2025.
  10. "Investigators - Chan Zuckerberg Biohub". Chan Zuckerberg Biohub. Retrieved March 30, 2025.
  11. "IGI Funds 24 New Research Projects". Innovative Genomics Institute. March 29, 2025. Retrieved March 30, 2025.
  12. Bassik, Michael C.; LeProust, Emily M.; Ebert, Benjamin L.; Rosenberg, Samuel; Ely, Alex; Holmes, Andrew; Jacobs, H. William; Greenside, Paul G.; Schuldiner, Maya; Scherens, Bruno; Weissman, Jonathan S.; McManus, Michael T. (2009). "Rapid creation and quantitative monitoring of high coverage shRNA libraries". Nature Methods. 6 (6): 443–445. doi:10.1038/nmeth.1330. PMC   2783737 . PMID   19448642.
  13. Roadmap Epigenomics Consortium; Kundaje, Anshul; Meuleman, Wouter; Ernst, Jason; Bilenky, Misha; Yen, Angela; Heravi-Moussavi, Alireza; Kheradpour, Pouya; Zhang, Zhiping; Wang, Jian; Ziller, Michael J.; Amin, Vishal; Whitaker, John W.; Schultz, Matthew D.; Ward, Lucas D.; Sarkar, Anshul; Quon, Gerald; Sandstrom, Richard S.; Eaton, Matthew L.; Wu, Yuan; Pfenning, Andrea R.; Wang, Xiao; Claussnitzer, Melina; Liu, Yun; Coarfa, Christian; Harris, Robert A.; Shoresh, Noam; Epstein, Charles B.; Gjoneska, Elizabeta; Leung, Diana; Xie, Wei; Hawkins, R. David; Lister, Ryan; Hong, Chun; Gascard, Philippe; Mungall, Andrew J.; Moore, Richard; Chuah, Eric; Tam, Angela; Canfield, Terence K.; Hansen, R. Scott; Kaul, Rajinder; Sabo, Peter J.; Bansal, Manish S.; Carles, Aleix; Dixon, Jesse R.; Farh, Kai-How; Feizi, Shahin; Karlic, Radoje; Kim, Alice R.; Kulkarni, Ameya; Li, Dan; Lowdon, Rebecca; Elliott, Graham; Mercer, Timothy R.; Neph, Shane J.; Onuchic, Vineet; Polak, Pascal; Rajagopal, Nisha; Ray, Pratap; Sallari, Richard C.; Siebenthall, Kyle T.; Sinnott-Armstrong, Naomi A.; Stevens, Michael; Thurman, Robert E.; Wu, Jian; Zhang, Beisi; Zhou, Xiaoyu; Beaudet, Arthur E.; Boyer, Laurie A.; De Jager, Philip L.; Farnham, Peggy J.; Fisher, Steven J.; Haussler, David; Jones, Steven J. M.; Li, Wei; Marra, Marco A.; McManus, Michael T.; Sunyaev, Shamil; Thomson, James A.; Tlsty, Thea D.; Tsai, Lili H.; Wang, Wei; Waterland, Robert A.; Zhang, Michael Q.; Chadwick, Lisa H.; Bernstein, Bradley E.; Costello, Joseph F.; Ecker, Joseph R.; Hirst, Martin; Meissner, Alexander; Milosavljevic, Aleksandar; Ren, Bing; Stamatoyannopoulos, John A.; Wang, Taiyuan; Kellis, Manolis (February 2015). "Integrative analysis of 111 reference human epigenomes". Nature. 518 (7539): 317–330. Bibcode:2015Natur.518..317.. doi:10.1038/nature14248. PMC   4530010 . PMID   25693563.
  14. Hangauer, Michael J.; Vaughn, Isaac W.; McManus, Michael T. (June 2013). "Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs". PLOS Genetics. 9 (6): e1003569. doi: 10.1371/journal.pgen.1003569 . PMC   3688513 . PMID   23818866.
  15. "CRISPR interference Mouse Modeltm1(CAG-mCherry,-cas9/ZNF10*)Mtm/J". The Jackson Laboratory.
  16. Martin, EW; Rodriguez Y Baena, A; Reggiardo, RE; Worthington, AK; Mattingly, CS; Poscablo, DM; Krietsch, J; McManus, MT; Carpenter, S; Kim, DH; Forsberg, EC (2023). "Dynamics of Chromatin Accessibility During Hematopoietic Stem Cell Differentiation Into Progressively Lineage-Committed Progeny". Stem Cells. 41 (5): 520–539. doi:10.1093/stmcls/sxad022. PMC   10183972 . PMID   36945732.
  17. Oguri, Y; Shinoda, K; Kim, H; Alba, DL; Bolus, WR; Wang, Q; Brown, Z; Pradhan, RN; Tajima, K; Yoneshiro, T; Ikeda, K; Chen, Y; Cheang, RT; Tsujino, K; Kim, CR; Greiner, VJ; Datta, R; Yang, CD; Atabai, K; McManus, MT; Koliwad, SK; Spiegelman, BM; Kajimura, S (2020). "CD81 Controls Beige Fat Progenitor Cell Growth and Energy Balance via FAK Signaling". Cell. 182 (3): 563–577.e20. doi:10.1016/j.cell.2020.06.021. PMC   7415677 . PMID   32615086.
  18. Yoneshiro, T; Wang, Q; Tajima, K; Matsushita, M; Maki, H; Igarashi, K; Dai, Z; White, PJ; McGarrah, RW; Ilkayeva, OR; Deleye, Y; Oguri, Y; Kuroda, M; Ikeda, K; Li, H; Ueno, A; Ohishi, M; Ishikawa, T; Kim, K; Chen, Y; Sponton, CH; Pradhan, RN; Majd, H; Greiner, VJ; McManus, MT; Saito, M; Soga, T; Kajimura, S (2019). "BCAA Catabolism in Brown Fat Controls Energy Homeostasis Through SLC25A44". Nature. 572 (7771): 614–619. Bibcode:2019Natur.572..614Y. doi:10.1038/s41586-019-1503-x. PMC   6715529 . PMID   31435015.
  19. Wang, TA; Teo, CF; Åkerblom, M; Chen, C; Tynan-La Fontaine, M; Greiner, VJ; Diaz, A; McManus, MT; Jan, YN; Jan, LY (2019). "Thermoregulation via Temperature-Dependent PGD2 Production in Mouse Preoptic Area". Neuron. 103 (2): 309–322.e7. doi:10.1016/j.neuron.2019.04.035. PMC   6639135 . PMID   31151773.
  20. Lindtner, S; Catta-Preta, R; Tian, H; Su-Feher, L; Price, JD; Dickel, DE; Greiner, V; Silberberg, SN; McKinsey, GL; McManus, MT; Pennacchio, LA; Visel, A; Nord, AS; Rubenstein, JLR (2019). "Genomic Resolution of DLX-Orchestrated Transcriptional Circuits Driving Development of Forebrain GABAergic Neurons". Cell Reports. 28 (8): 2048–2063.e8. doi:10.1016/j.celrep.2019.07.022. PMC   6750766 . PMID   31433982.
  21. Boettcher, Michael; Tian, Ruilin; Blau, James A.; Markegard, Evan; Wagner, Ryan T.; Wu, David; Mo, Xiulei; Biton, Anne; Zaitlen, Noah; Fu, Haian; McCormick, Frank; Kampmann, Martin; McManus, Michael T. (February 2018). "Dual gene activation and knockout screen reveals directional dependencies in genetic networks". Nature Biotechnology. 36 (2): 170–178. doi:10.1038/nbt.4062. PMC   6072461 . PMID   29334369.
  22. Bassik, Michael C.; Kampmann, Martin; Lebbink, Robert Jan; Wang, Shuyi; Hein, Marco Y.; Poser, Ina; Weibezahn, Jimena; Horlbeck, Max A.; Chen, Siyuan; Mann, Matthias; Hyman, Anthony A.; LeProust, Emily M.; McManus, Michael T.; Weissman, Jonathan S. (February 2013). "A systematic mammalian genetic interaction map reveals pathways underlying ricin susceptibility". Cell. 152 (4): 909–922. doi:10.1016/j.cell.2013.01.030. PMC   3652613 . PMID   23394947.
  23. Hangauer, MJ; Viswanathan, VS; Ryan, MJ; Bole, D; Eaton, JK; Matov, A (2017). "Drug-tolerant persister cancer cells are vulnerable to GPX4 inhibition". Nature. 551 (7679): 247–250. Bibcode:2017Natur.551..247H. doi:10.1038/nature24297. PMC   5933935 . PMID   29120424.
  24. "Michael McManus, PhD". UCSF Helen Diller Family Comprehensive Cancer Center. Retrieved March 29, 2025.
  25. "Funded Research - Transformative Research Award". NIH Common Fund. Retrieved March 30, 2025.
  26. "The Robert J. Kleberg, Jr. and Helen C. Kleberg Foundation". Kleberg Foundation. Retrieved March 30, 2025.
  27. "Awards and Honors". McManus Lab - UCSF. Retrieved March 30, 2025.