The term neopolarogram refers to mathematical derivatives of polarograms or cyclic voltammograms that in effect deconvolute diffusion and electrochemical kinetics. This is achieved by analog or digital implementations of fractional calculus. [1] The implementation of fractional derivative calculations by means of numerical methods is straight forward. The G1- (Grünwald–Letnikov derivative) and the RL0-algorithms (Riemann–Liouville integral) are recursive methods to implement a numerical calculation of fractional differintegrals. Yet differintegrals are faster to compute in discrete fourier space using FFT. [2]
The graphs below show the behaviour of fractional derivatives calculated by different algorithms for ferrocene in acetonitrile at 100mV/s, the reference electrode is 0.1M Ag+/Ag in acetonitrile (+0.04V vs. Fc [3] ).
1.5th order derivative of a voltammogram hits the abscissa exactly at the point where the formal potential of the electrode reaction is found.
Typical 1.5th order semiderivative for a reversible reaction, ferrocene has a formal potential of 40mV vs. ATE1. [3] |
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The G1 algorithm produces a numerical derivative that has the shape of a bell curve, this derivative obeys to certain laws, for example the G1 derivative of a cyclic voltammogram is mirrored at the abscissa as long as the electrochemical reaction is diffusion controlled, the planar diffusion approximation can be applied to the electrode geometry [4] and ohmic drop distortion is minimal. The FWHM of the curve is approximately 100 mV for a system that behaves in the described manner. The maximum is found at the value of the formal potential, this is equivalent to the 1.5th order semiderivative hitting the abscissa at this potential. Moreover the semiderivative scales linearly with the scanrate, while the current scales linearly with the square root of the scanrate (Randles–Sevcik equation). Plotting the semiderivatives produced at different scanrates gives a family of curves that are linearly related by the scanrate quotient in an ideal system.
Typical semiderivative for a reversible reaction, recursive algorithms and FFT methods yield equivalent results. |
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The shape of the semiintegral can be used as an easy method to measure the amount of ohmic drop of an electrochemical cell in cyclic voltammetry. Essentially the semiintegral of a cyclic voltammogram at a planar electrode (an electrode that obeys to the rules of planar diffusion) has the shape of a sigmoid while the original data is gauss-sigmoid convoluted. This enables the operator to optimize parameters necessary for positive feedback compensation in an easy manner. [5] If ohmic drop distortion is present the two sigmoids for the forward and the backward scan are far away from congruence, the ohmic drop can be calculated from the deviation from congruence in these cases. In the example shown slight distortion is present, yet this does not have adverse effects on data quality.
Typical semiintegral for a reversible reaction, recursive algorithms and FFT methods yield slightly different results due to non-perfect periodicity of cyclic voltammetry data. |
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The implementation differintegral calculation using fast fourier transform has certain benefits because it is easily combined with low pass quadratic filtering methods. [6] This is very useful when cyclic voltammograms are recorded in high resistivity solvents like tetrahydrofuran or toluene, where feedback oscillations are a frequent problem.
A fast Fourier transform (FFT) is an algorithm that computes the discrete Fourier transform (DFT) of a sequence, or its inverse (IDFT). Fourier analysis converts a signal from its original domain to a representation in the frequency domain and vice versa. The DFT is obtained by decomposing a sequence of values into components of different frequencies. This operation is useful in many fields, but computing it directly from the definition is often too slow to be practical. An FFT rapidly computes such transformations by factorizing the DFT matrix into a product of sparse factors. As a result, it manages to reduce the complexity of computing the DFT from , which arises if one simply applies the definition of DFT, to , where is the data size. The difference in speed can be enormous, especially for long data sets where N may be in the thousands or millions. In the presence of round-off error, many FFT algorithms are much more accurate than evaluating the DFT definition directly or indirectly. There are many different FFT algorithms based on a wide range of published theories, from simple complex-number arithmetic to group theory and number theory.
Ferrocene is an organometallic compound with the formula Fe(C5H5)2. The molecule is a complex consisting of two cyclopentadienyl rings bound to a central iron atom. It is an orange solid with a camphor-like odor, that sublimes above room temperature, and is soluble in most organic solvents. It is remarkable for its stability: it is unaffected by air, water, strong bases, and can be heated to 400 °C without decomposition. In oxidizing conditions it can reversibly react with strong acids to form the ferrocenium cation Fe(C5H5)+2.
Fractional calculus is a branch of mathematical analysis that studies the several different possibilities of defining real number powers or complex number powers of the differentiation operator
Cyclic voltammetry (CV) is a type of potentiodynamic electrochemical measurement. In a cyclic voltammetry experiment, the working electrode potential is ramped linearly versus time. Unlike in linear sweep voltammetry, after the set potential is reached in a CV experiment, the working electrode's potential is ramped in the opposite direction to return to the initial potential. These cycles of ramps in potential may be repeated as many times as needed. The current at the working electrode is plotted versus the applied voltage to give the cyclic voltammogram trace. Cyclic voltammetry is generally used to study the electrochemical properties of an analyte in solution or of a molecule that is adsorbed onto the electrode.
Dither is an intentionally applied form of noise used to randomize quantization error, preventing large-scale patterns such as color banding in images. Dither is routinely used in processing of both digital audio and video data, and is often one of the last stages of mastering audio to a CD.
Voltammetry is a category of electroanalytical methods used in analytical chemistry and various industrial processes. In voltammetry, information about an analyte is obtained by measuring the current as the potential is varied. The analytical data for a voltammetric experiment comes in the form of a voltammogram which plots the current produced by the analyte versus the potential of the working electrode.
Chronoamperometry is an electrochemical technique in which the potential of the working electrode is stepped and the resulting current from faradaic processes occurring at the electrode is monitored as a function of time. The functional relationship between current response and time is measured after applying single or double potential step to the working electrode of the electrochemical system. Limited information about the identity of the electrolyzed species can be obtained from the ratio of the peak oxidation current versus the peak reduction current. However, as with all pulsed techniques, chronoamperometry generates high charging currents, which decay exponentially with time as any RC circuit. The Faradaic current - which is due to electron transfer events and is most often the current component of interest - decays as described in the Cottrell equation. In most electrochemical cells this decay is much slower than the charging decay-cells with no supporting electrolyte are notable exceptions. Most commonly a three electrode system is used. Since the current is integrated over relatively longer time intervals, chronoamperometry gives a better signal to noise ratio in comparison to other amperometric techniques.
PQS is a general purpose quantum chemistry program. Its roots go back to the first ab initio gradient program developed in Professor Peter Pulay's group but now it is developed and distributed commercially by Parallel Quantum Solutions. There is a reduction in cost for academic users and a site license. Its strong points are geometry optimization, NMR chemical shift calculations, and large MP2 calculations, and high parallel efficiency on computing clusters. It includes many other capabilities including Density functional theory, the semiempirical methods, MINDO/3, MNDO, AM1 and PM3, Molecular mechanics using the SYBYL 5.0 Force Field, the quantum mechanics/molecular mechanics mixed method using the ONIOM method, natural bond orbital (NBO) analysis and COSMO solvation models. Recently, a highly efficient parallel CCSD(T) code for closed shell systems has been developed. This code includes many other post Hartree–Fock methods: MP2, MP3, MP4, CISD, CEPA, QCISD and so on.
Polarography is a type of voltammetry where the working electrode is a dropping mercury electrode (DME) or a static mercury drop electrode (SMDE), which are useful for their wide cathodic ranges and renewable surfaces. It was invented in 1922 by Czech chemist Jaroslav Heyrovský, for which he won the Nobel prize in 1959.
Single-carrier FDMA (SC-FDMA) is a frequency-division multiple access scheme. It is also called linearly precoded OFDMA (LP-OFDMA). Like other multiple access schemes, it deals with the assignment of multiple users to a shared communication resource. SC-FDMA can be interpreted as a linearly precoded OFDMA scheme, in the sense that it has an additional DFT processing step preceding the conventional OFDMA processing.
In electrochemistry, the Cottrell equation describes the change in electric current with respect to time in a controlled potential experiment, such as chronoamperometry. Specifically it describes the current response when the potential is a step function in time. It was derived by Frederick Gardner Cottrell in 1903. For a simple redox event, such as the ferrocene/ferrocenium couple, the current measured depends on the rate at which the analyte diffuses to the electrode. That is, the current is said to be "diffusion controlled." The Cottrell equation describes the case for an electrode that is planar but can also be derived for spherical, cylindrical, and rectangular geometries by using the corresponding laplace operator and boundary conditions in conjunction with Fick's second law of diffusion.
Squarewave voltammetry (SWV) is a form of linear potential sweep voltammetry that uses a combined square wave and staircase potential applied to a stationary electrode. It has found numerous applications in various fields, including within medicinal and various sensing communities.
Gas diffusion electrodes (GDE) are electrodes with a conjunction of a solid, liquid and gaseous interface, and an electrical conducting catalyst supporting an electrochemical reaction between the liquid and the gaseous phase.
An ultramicroelectrode (UME) is a working electrode used in a voltammetry. The small size of UME give them large diffusion layers and small overall currents. These features allow UME to achieve useful steady-state conditions and very high scan rates (V/s) with limited distortion. UME were developed independently by Wightman and Fleischmann around 1980. Small current at UME enables electrochemical measurements in low conductive media, where voltage drop associated with high solution resistance makes these experiments difficult for conventional electrodes. Furthermore, small voltage drop at UME leads to a very small voltage distortion at the electrode-solution interface which allows using two-electrode setup in voltammetric experiment instead of conventional three-electrode setup.
Scanning electrochemical microscopy (SECM) is a technique within the broader class of scanning probe microscopy (SPM) that is used to measure the local electrochemical behavior of liquid/solid, liquid/gas and liquid/liquid interfaces. Initial characterization of the technique was credited to University of Texas electrochemist, Allen J. Bard, in 1989. Since then, the theoretical underpinnings have matured to allow widespread use of the technique in chemistry, biology and materials science. Spatially resolved electrochemical signals can be acquired by measuring the current at an ultramicroelectrode (UME) tip as a function of precise tip position over a substrate region of interest. Interpretation of the SECM signal is based on the concept of diffusion-limited current. Two-dimensional raster scan information can be compiled to generate images of surface reactivity and chemical kinetics.
The following is a timeline of scientific computing, also known as computational science.
In the fields of dynamical systems and control theory, a fractional-order system is a dynamical system that can be modeled by a fractional differential equation containing derivatives of non-integer order. Such systems are said to have fractional dynamics. Derivatives and integrals of fractional orders are used to describe objects that can be characterized by power-law nonlocality, power-law long-range dependence or fractal properties. Fractional-order systems are useful in studying the anomalous behavior of dynamical systems in physics, electrochemistry, biology, viscoelasticity and chaotic systems.
Pseudocapacitance is the electrochemical storage of electricity in an electrochemical capacitor (Pseudocapacitor). This faradaic charge transfer originates by a very fast sequence of reversible faradaic redox, electrosorption or intercalation processes on the surface of suitable electrodes. Pseudocapacitance is accompanied by an electron charge-transfer between electrolyte and electrode coming from a de-solvated and adsorbed ion. One electron per charge unit is involved. The adsorbed ion has no chemical reaction with the atoms of the electrode since only a charge-transfer takes place.
In electrochemistry, protein film voltammetry is a technique for examining the behavior of proteins immobilized on an electrode. The technique is applicable to proteins and enzymes that engage in electron transfer reactions and it is part of the methods available to study enzyme kinetics.