Nucleomodulin

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Agrobacterium tumefaciens (A) targets the nucleus of a plant cell (D) during an infection. Transfection by Agrobacterium.svg
Agrobacterium tumefaciens (A) targets the nucleus of a plant cell (D) during an infection.

Nucleomodulins are a family of bacterial proteins that enter the nucleus of eukaryotic cells. [1]

This term comes from the contraction between "nucleus" and "modulins", which are microbial molecules that modulate the behaviour of eukaryotic cells. Nucleomodulins are produced by pathogenic or symbiotic bacteria. They act on various processes in the nucleus: remodelling of the chromatin structure, [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [ excessive citations ] transcription, [13] [14] splicing of pre-messenger RNA, [15] [16] cell division. [17]

The identification of nucleomodulins in several species of bacterial pathogens of humans, animals and plants has led to the emergence of the concept that direct control of the nucleus is one of the most sophisticated strategies used by microbes to bypass host defences. Nucleomodulins can be directly secreted into the intracellular medium after entry of the bacteria into the cell, like Listeria monocytogenes , or they can be injected from the extracellular medium or intracellular organelles using a type III or IV bacterial secretion system, also known as a "molecular syringe".[ citation needed ]

More recently, it has been shown that some of them, such as YopM from Yersinia pestis and IpaH9.8 from Shigella flexneri , can autonomously penetrate eukaryotic cells thanks to a membrane transduction domain. [18]

The diversity of molecular mechanisms triggered by nucleomodulins [1] [19] is a source of inspiration for new biotechnologies. They are true nano-machines capable of hijacking a multitude of nuclear processes. In research, nucleomodulins are the subject of in-depth studies that have led to the discovery of new human nuclear regulators, such as the epigenetic regulator BAHD1. [8]

Examples

Agrobacterium tumefaciens , responsible for crown gall disease, produces an arsenal of Vir proteins, including VirD2 and VirE2, enabling the precise integration of a piece of its DNA, called T-DNA, into that of the host plant [20]

Listeria monocytogenes , responsible for listeriosis, can modulate the expression of immunity genes. One of the mechanisms at play involves the bacterial protein LntA, which inhibits the function of the epigenetic regulator BAHD1. The action of this nucleomodulin is associated with chromatin decompaction and activation of an interferon response genes. [8] [21]

Shigella flexneri , responsible for shigellosis, secretes the IpaH9.8 protein targeting a mRNA splicing protein that disrupts the production of protein isoforms and the inflammatory response in humans. [16]

Legionella pneumophila, responsible for legionellosis, secretes an enzyme with histone methyltransferase activity capable of methylating histones at different chromosome loci [22] or at the level of ribosomal DNA (rDNA) in the nucleolus. [23]

References

  1. 1 2 Bierne, Hélène; Cossart, Pascale (May 2012). "When bacteria target the nucleus: the emerging family of nucleomodulins". Cellular Microbiology. 14 (5): 622–33. doi: 10.1111/j.1462-5822.2012.01758.x . ISSN   1462-5822. PMID   22289128. S2CID   40506912.
  2. Skrzypek, E.; Cowan, C.; Straley, S. C. (December 1998). "Targeting of the Yersinia pestis YopM protein into HeLa cells and intracellular trafficking to the nucleus". Molecular Microbiology. 30 (5): 1051–65. doi: 10.1046/j.1365-2958.1998.01135.x . ISSN   0950-382X. PMID   9988481. S2CID   5562445.
  3. Li, Hongtao; Xu, Hao; Zhou, Yan; Zhang, Jie (2007-02-16). "The phosphothreonine lyase activity of a bacterial type III effector family". Science. 315 (5814): 1000–3. Bibcode:2007Sci...315.1000L. doi:10.1126/science.1138960. ISSN   1095-9203. PMID   17303758. S2CID   6798326.
  4. Arbibe, Laurence; Kim, Dong Wook; Batsche, Eric; Pedron, Thierry (January 2007). "An injected bacterial effector targets chromatin access for transcription factor NF-kappaB to alter transcription of host genes involved in immune responses". Nature Immunology. 8 (1): 47–56. doi:10.1038/ni1423. ISSN   1529-2908. PMID   17159983. S2CID   25557624.
  5. Pennini, Meghan E.; Perrinet, Stéphanie; Dautry-Varsat, Alice; Subtil, Agathe (2010-07-15). "Histone methylation by NUE, a novel nuclear effector of the intracellular pathogen Chlamydia trachomatis". PLOS Pathogens. 6 (7): e1000995. doi: 10.1371/journal.ppat.1000995 . ISSN   1553-7374. PMC   2904774 . PMID   20657819.
  6. Rolando, Monica; Sanulli, Serena; Rusniok, Christophe; Gomez-Valero, Laura (April 2013). "Legionella pneumophila Effector RomA Uniquely Modifies Host Chromatin to Repress Gene Expression and Promote Intracellular Bacterial Replication". Cell Host & Microbe. 13 (4): 395–405. doi: 10.1016/j.chom.2013.03.004 . PMID   23601102.
  7. Li, Ting; Lu, Qiuhe; Wang, Guolun; Xu, Hao (August 2013). "SET-domain bacterial effectors target heterochromatin protein 1 to activate host rDNA transcription". EMBO Reports. 14 (8): 733–40. doi:10.1038/embor.2013.86. ISSN   1469-221X. PMC   3736128 . PMID   23797873.
  8. 1 2 3 Lebreton, Alice; Lakisic, Goran; Job, Viviana; Fritsch, Lauriane (2011-03-11). "A bacterial protein targets the BAHD1 chromatin complex to stimulate type III interferon response" (PDF). Science. 331 (6022): 1319–21. Bibcode:2011Sci...331.1319L. doi:10.1126/science.1200120. ISSN   1095-9203. PMID   21252314. S2CID   35405265.
  9. Rennoll-Bankert, Kristen E.; Garcia-Garcia, Jose C.; Sinclair, Sara H.; Dumler, J. Stephen (November 2015). "Chromatin-bound bacterial effector ankyrin A recruits histone deacetylase 1 and modifies host gene expression: AnkA recruits HDAC1 to modify CYBB expression". Cellular Microbiology. 17 (11): 1640–52. doi:10.1111/cmi.12461. PMC   5845759 . PMID   25996657.
  10. Farris, Tierra R.; Dunphy, Paige S.; Zhu, Bing; Kibler, Clayton E. (November 2016). "Ehrlichia chaffeensis TRP32 Is a Nucleomodulin That Directly Regulates Expression of Host Genes Governing Differentiation and Proliferation". Infection and Immunity. 84 (11): 3182–3194. doi:10.1128/IAI.00657-16. ISSN   0019-9567. PMC   5067751 . PMID   27572329.
  11. Mitra, Shubhajit; Dunphy, Paige S.; Das, Seema; Zhu, Bing (2018-01-22). "Ehrlichia chaffeensis TRP120 Effector Targets and Recruits Host Polycomb Group Proteins for Degradation To Promote Intracellular Infection". Infection and Immunity. 86 (4): e00845–17, /iai/86/4/e00845–17.atom. doi:10.1128/IAI.00845-17. ISSN   0019-9567. PMC   5865042 . PMID   29358333.
  12. Yaseen, Imtiyaz; Kaur, Prabhjot; Nandicoori, Vinay Kumar; Khosla, Sanjeev (December 2015). "Mycobacteria modulate host epigenetic machinery by Rv1988 methylation of a non-tail arginine of histone H3". Nature Communications. 6 (1): 8922. Bibcode:2015NatCo...6.8922Y. doi: 10.1038/ncomms9922 . ISSN   2041-1723. PMID   26568365.
  13. Kay, Sabine; Hahn, Simone; Marois, Eric; Hause, Gerd (2007-10-26). "A Bacterial Effector Acts as a Plant Transcription Factor and Induces a Cell Size Regulator". Science. 318 (5850): 648–651. Bibcode:2007Sci...318..648K. doi:10.1126/science.1144956. ISSN   0036-8075. PMID   17962565. S2CID   11544887.
  14. Römer, Patrick; Hahn, Simone; Jordan, Tina; Strauß, Tina (2007-10-26). "Plant Pathogen Recognition Mediated by Promoter Activation of the Pepper Bs3 Resistance Gene". Science. 318 (5850): 645–8. Bibcode:2007Sci...318..645R. doi:10.1126/science.1144958. ISSN   0036-8075. PMID   17962564. S2CID   19340482.
  15. Toyotome, Takahito; Suzuki, Toshihiko; Kuwae, Asaomi; Nonaka, Takashi (2001-08-24). "Shigella Protein IpaH 9.8 Is Secreted from Bacteria within Mammalian Cells and Transported to the Nucleus". Journal of Biological Chemistry. 276 (34): 32071–32079. doi: 10.1074/jbc.M101882200 . ISSN   0021-9258. PMID   11418613.
  16. 1 2 Okuda, Jun; Toyotome, Takahito; Kataoka, Naoyuki; Ohno, Mutsuhito (July 2005). "Shigella effector IpaH9.8 binds to a splicing factor U2AF35 to modulate host immune responses". Biochemical and Biophysical Research Communications. 333 (2): 531–9. doi:10.1016/j.bbrc.2005.05.145. PMID   15950937.
  17. Taieb, Frédéric; Nougayrède, Jean-Philippe; Oswald, Eric (2011-03-29). "Cycle Inhibiting Factors (Cifs): Cyclomodulins That Usurp the Ubiquitin-Dependent Degradation Pathway of Host Cells". Toxins. 3 (4): 356–68. doi: 10.3390/toxins3040356 . ISSN   2072-6651. PMC   3202828 . PMID   22069713.
  18. Norkowski, Stefanie; Körner, Britta; Greune, Lilo; Stolle, Anne-Sophie; Lubos, Marie-Luise; Hardwidge, Philip R.; Schmidt, M. Alexander; Rüter, Christian (2018-06-01). "Bacterial LPX motif-harboring virulence factors constitute a species-spanning family of cell-penetrating effectors". Cellular and Molecular Life Sciences. 75 (12): 2273–2289. doi:10.1007/s00018-017-2733-4. ISSN   1420-9071. PMC   11105228 . PMID   29285573. S2CID   7904315.
  19. Bierne, Hélène (2017), "Cross Talk Between Bacteria and the Host Epigenetic Machinery", in Doerfler, Walter; Casadesús, Josep (eds.), Epigenetics of Infectious Diseases, Epigenetics and Human Health, Springer International Publishing, pp. 113–158, doi:10.1007/978-3-319-55021-3_6, ISBN   978-3-319-55021-3
  20. Pelczar, Pawel; Kalck, Véronique; Gomez, Divina; Hohn, Barbara (June 2004). "Agrobacterium proteins VirD2 and VirE2 mediate precise integration of synthetic T-DNA complexes in mammalian cells". EMBO Reports. 5 (6): 632–7. doi:10.1038/sj.embor.7400165. ISSN   1469-221X. PMC   1299075 . PMID   15153934.
  21. Lebreton, Alice; Job, Viviana; Ragon, Marie; Le Monnier, Alban (2014-01-21). "Structural basis for the inhibition of the chromatin repressor BAHD1 by the bacterial nucleomodulin LntA". mBio. 5 (1): e00775-13. doi:10.1128/mBio.00775-13. ISSN   2150-7511. PMC   3903274 . PMID   24449750.
  22. Rolando, Monica; et al. (April 2013). "Legionella pneumophila Effector RomA Uniquely Modifies Host Chromatin to Repress Gene Expression and Promote Intracellular Bacterial Replication". Cell Host & Microbe. 13 (4): 395–405. doi: 10.1016/j.chom.2013.03.004 . PMID   23601102.
  23. Li, Ting; et al. (August 2013). "SET-domain bacterial effectors target heterochromatin protein 1 to activate host rDNA transcription". EMBO Reports. 14 (8): 733–740. doi:10.1038/embor.2013.86. ISSN   1469-221X. PMC   3736128 . PMID   23797873.